RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 EFCAB6Q5THR3 1501 aa20.93■□□□□ 0.94
CTCF-201ENST00000264010 MADDQ8WXG6 1647 aa20.93■□□□□ 0.94
CTCF-201ENST00000264010 A0A0U1RQG5 324 aaPredicted RBP20.93■□□□□ 0.94
CTCF-201ENST00000264010 FTSJ3Q8IY81 847 aaKnown RBP20.93■□□□□ 0.94
CTCF-201ENST00000264010 BLMP54132 1417 aaPredicted RBP20.92■□□□□ 0.94
CTCF-201ENST00000264010 CARD14Q9BXL6 1004 aa20.92■□□□□ 0.94
CTCF-201ENST00000264010 PDE4AP27815 886 aa20.91■□□□□ 0.94
CTCF-201ENST00000264010 TCP11L2Q8N4U5 519 aa20.91■□□□□ 0.94
CTCF-201ENST00000264010 IPO9Q96P70 1041 aaKnown RBP20.91■□□□□ 0.94
CTCF-201ENST00000264010 DUSP27Q5VZP5 1158 aa20.9■□□□□ 0.94
CTCF-201ENST00000264010 GGNBP2Q9H3C7 697 aa20.9■□□□□ 0.94
CTCF-201ENST00000264010 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.89■□□□□ 0.93
CTCF-201ENST00000264010 SBNO2Q9Y2G9 1366 aa20.89■□□□□ 0.93
CTCF-201ENST00000264010 SYNMO15061 1565 aa20.88■□□□□ 0.93
CTCF-201ENST00000264010 KIF1BO60333 1816 aa20.88■□□□□ 0.93
CTCF-201ENST00000264010 ATAD2Q6PL18 1390 aa20.88■□□□□ 0.93
CTCF-201ENST00000264010 FBXO31Q5XUX0 539 aaPredicted RBP20.88■□□□□ 0.93
CTCF-201ENST00000264010 PUS7Q96PZ0 661 aaKnown RBP20.88■□□□□ 0.93
CTCF-201ENST00000264010 HECW2Q9P2P5 1572 aa20.87■□□□□ 0.93
CTCF-201ENST00000264010 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.87■□□□□ 0.93
CTCF-201ENST00000264010 PPP6R1Q9UPN7 881 aa20.87■□□□□ 0.93
CTCF-201ENST00000264010 UPF2Q9HAU5 1272 aaKnown RBP20.86■□□□□ 0.93
CTCF-201ENST00000264010 CFAP65Q6ZU64 1925 aaKnown RBP20.86■□□□□ 0.93
CTCF-201ENST00000264010 KDM5AP29375 1690 aaKnown RBP20.86■□□□□ 0.93
CTCF-201ENST00000264010 ARID3AQ99856 593 aa20.85■□□□□ 0.93
CTCF-201ENST00000264010 MAP3K4Q9Y6R4 1608 aa20.85■□□□□ 0.93
CTCF-201ENST00000264010 ERVK-7P63135 1459 aa20.85■□□□□ 0.93
CTCF-201ENST00000264010 PLEKHH1Q9ULM0 1364 aa20.84■□□□□ 0.93
CTCF-201ENST00000264010 CEP152O94986 1710 aa20.84■□□□□ 0.93
CTCF-201ENST00000264010 ZMYM4Q5VZL5 1548 aa20.84■□□□□ 0.93
CTCF-201ENST00000264010 RNF17Q9BXT8 1623 aaKnown RBP20.84■□□□□ 0.93
CTCF-201ENST00000264010 WWC1Q8IX03 1113 aa20.83■□□□□ 0.93
CTCF-201ENST00000264010 CDK19Q9BWU1 502 aa20.83■□□□□ 0.93
CTCF-201ENST00000264010 POLR3AO14802 1390 aaPredicted RBP20.83■□□□□ 0.92
CTCF-201ENST00000264010 DIAPH1O60610 1272 aaKnown RBP20.83■□□□□ 0.92
CTCF-201ENST00000264010 LMTK2Q8IWU2 1503 aa20.83■□□□□ 0.92
CTCF-201ENST00000264010 NSD2O96028 1365 aa20.83■□□□□ 0.92
CTCF-201ENST00000264010 WDR63Q8IWG1 891 aa20.81■□□□□ 0.92
CTCF-201ENST00000264010 DEPDC5O75140 1603 aa20.81■□□□□ 0.92
CTCF-201ENST00000264010 BCAR3O75815 825 aa20.81■□□□□ 0.92
CTCF-201ENST00000264010 C20orf194Q5TEA3 1177 aa20.81■□□□□ 0.92
CTCF-201ENST00000264010 PAK3O75914 559 aaPredicted RBP20.8■□□□□ 0.92
CTCF-201ENST00000264010 PODXL2Q9NZ53 605 aa20.8■□□□□ 0.92
CTCF-201ENST00000264010 COG6Q9Y2V7 657 aa20.8■□□□□ 0.92
CTCF-201ENST00000264010 ANKRD36BQ8N2N9 1353 aa20.8■□□□□ 0.92
CTCF-201ENST00000264010 PMFBP1Q8TBY8 1022 aa20.8■□□□□ 0.92
CTCF-201ENST00000264010 NINLQ9Y2I6 1382 aa20.8■□□□□ 0.92
CTCF-201ENST00000264010 NKTRP30414 1462 aaKnown RBP20.8■□□□□ 0.92
CTCF-201ENST00000264010 VWDEQ8N2E2 1590 aa20.8■□□□□ 0.92
CTCF-201ENST00000264010 ABCC3O15438 1527 aa20.79■□□□□ 0.92
CTCF-201ENST00000264010 CABP1Q9NZU7 370 aa20.79■□□□□ 0.92
CTCF-201ENST00000264010 SMC4Q9NTJ3 1288 aa20.79■□□□□ 0.92
CTCF-201ENST00000264010 KIDINS220Q9ULH0 1771 aa20.79■□□□□ 0.92
CTCF-201ENST00000264010 PDE3AQ14432 1141 aa20.78■□□□□ 0.92
CTCF-201ENST00000264010 BCL2L13Q9BXK5 485 aa20.78■□□□□ 0.92
CTCF-201ENST00000264010 CALD1Q05682 793 aaKnown RBP20.78■□□□□ 0.92
CTCF-201ENST00000264010 CLUAP1Q96AJ1 413 aa20.78■□□□□ 0.92
CTCF-201ENST00000264010 YEATS2Q9ULM3 1422 aa20.77■□□□□ 0.92
CTCF-201ENST00000264010 RWDD1Q9H446 243 aaPredicted RBP20.77■□□□□ 0.92
CTCF-201ENST00000264010 IPO8O15397 1037 aaKnown RBP20.76■□□□□ 0.91
CTCF-201ENST00000264010 PPRC1Q5VV67 1664 aaKnown RBP20.76■□□□□ 0.91
CTCF-201ENST00000264010 EID1Q9Y6B2 187 aa20.75■□□□□ 0.91
CTCF-201ENST00000264010 IQGAP1P46940 1657 aa20.75■□□□□ 0.91
CTCF-201ENST00000264010 FAM161AQ3B820 660 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 ABCA6Q8N139 1617 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 RIPK4P57078 832 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 PANK1Q8TE04 598 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 ZKSCAN2Q63HK3 967 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 COG3Q96JB2 828 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 ADGRB3O60242 1522 aa20.74■□□□□ 0.91
CTCF-201ENST00000264010 BACH2Q9BYV9 841 aa20.73■□□□□ 0.91
CTCF-201ENST00000264010 AAMPQ13685 434 aa20.73■□□□□ 0.91
CTCF-201ENST00000264010 CHMP4BQ9H444 224 aaKnown RBP20.72■□□□□ 0.91
CTCF-201ENST00000264010 NEURL4Q96JN8 1562 aa20.72■□□□□ 0.91
CTCF-201ENST00000264010 KIAA1210Q9ULL0 1709 aa20.72■□□□□ 0.91
CTCF-201ENST00000264010 ARHGAP31Q2M1Z3 1444 aa20.71■□□□□ 0.91
CTCF-201ENST00000264010 WAPLQ7Z5K2 1190 aa20.7■□□□□ 0.9
CTCF-201ENST00000264010 TXNDC2Q86VQ3 553 aa20.7■□□□□ 0.9
CTCF-201ENST00000264010 ITPRIPQ8IWB1 547 aa20.7■□□□□ 0.9
CTCF-201ENST00000264010 YTHDC2Q9H6S0 1430 aaKnown RBP20.68■□□□□ 0.9
CTCF-201ENST00000264010 LMOD3Q0VAK6 560 aa20.68■□□□□ 0.9
CTCF-201ENST00000264010 BECN1Q14457 450 aa20.68■□□□□ 0.9
CTCF-201ENST00000264010 DZIP1LQ8IYY4 767 aaKnown RBP20.67■□□□□ 0.9
CTCF-201ENST00000264010 ZNF521Q96K83 1311 aa20.67■□□□□ 0.9
CTCF-201ENST00000264010 SETBP1Q9Y6X0 1596 aa20.67■□□□□ 0.9
CTCF-201ENST00000264010 CT47B1P0C2W7 299 aaPredicted RBP20.66■□□□□ 0.9
CTCF-201ENST00000264010 SPINK5Q9NQ38 1064 aaPredicted RBP20.66■□□□□ 0.9
CTCF-201ENST00000264010 MROH1Q8NDA8 1641 aa20.66■□□□□ 0.9
CTCF-201ENST00000264010 RARSP54136 660 aaKnown RBP20.65■□□□□ 0.9
CTCF-201ENST00000264010 FYB1O15117 783 aa20.65■□□□□ 0.9
CTCF-201ENST00000264010 TMPOP42166 694 aaKnown RBP20.65■□□□□ 0.9
CTCF-201ENST00000264010 A0A1W2PP64 1363 aa20.65■□□□□ 0.9
CTCF-201ENST00000264010 NUTM2FA1L443 756 aa20.64■□□□□ 0.9
CTCF-201ENST00000264010 SOX12O15370 315 aa20.64■□□□□ 0.9
CTCF-201ENST00000264010 NRXN1Q9ULB1 1477 aa20.64■□□□□ 0.89
CTCF-201ENST00000264010 RIMS2Q9UQ26 1411 aa20.64■□□□□ 0.89
CTCF-201ENST00000264010 EXOSC9Q06265 439 aaKnown RBP20.64■□□□□ 0.89
CTCF-201ENST00000264010 CCDC27Q2M243 656 aa20.64■□□□□ 0.89
CTCF-201ENST00000264010 TSR2Q969E8 191 aaKnown RBP20.63■□□□□ 0.89
CTCF-201ENST00000264010 PRKAR2BP31323 418 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms