RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CDC42BPGQ6DT37 1551 aa33.37■■■□□ 2.93
LSM4-201ENST00000252816 JCADQ9P266 1359 aa33.35■■■□□ 2.93
LSM4-201ENST00000252816 ORAI2Q96SN7 254 aa33.34■■■□□ 2.93
LSM4-201ENST00000252816 DDX17Q92841 729 aaKnown RBP33.33■■■□□ 2.93
LSM4-201ENST00000252816 SIN3AQ96ST3 1273 aa33.33■■■□□ 2.93
LSM4-201ENST00000252816 NHSL1Q5SYE7 1610 aa33.32■■■□□ 2.92
LSM4-201ENST00000252816 PRAM1Q96QH2 718 aa33.32■■■□□ 2.92
LSM4-201ENST00000252816 DLC1Q96QB1 1528 aa33.31■■■□□ 2.92
LSM4-201ENST00000252816 TRAK1Q9UPV9 953 aa33.29■■■□□ 2.92
LSM4-201ENST00000252816 SAFB2Q14151 953 aaKnown RBP eCLIP33.28■■■□□ 2.92
LSM4-201ENST00000252816 PHF23Q9BUL5 403 aaPredicted RBP33.27■■■□□ 2.92
LSM4-201ENST00000252816 NUTM2FA1L443 756 aa33.26■■■□□ 2.91
LSM4-201ENST00000252816 POGKQ9P215 609 aa33.25■■■□□ 2.91
LSM4-201ENST00000252816 L3MBTL2Q969R5 705 aa33.24■■■□□ 2.91
LSM4-201ENST00000252816 NEUROD1Q13562 356 aa33.23■■■□□ 2.91
LSM4-201ENST00000252816 ESCO1Q5FWF5 840 aa33.23■■■□□ 2.91
LSM4-201ENST00000252816 FMN2Q9NZ56 1722 aa33.22■■■□□ 2.91
LSM4-201ENST00000252816 SHPRHQ149N8 1683 aa33.21■■■□□ 2.91
LSM4-201ENST00000252816 LRRC59Q96AG4 307 aaKnown RBP33.19■■■□□ 2.9
LSM4-201ENST00000252816 RGS17Q9UGC6 210 aaPredicted RBP33.19■■■□□ 2.9
LSM4-201ENST00000252816 SPATA31A6Q5VVP1 1343 aa33.19■■■□□ 2.9
LSM4-201ENST00000252816 SOS2Q07890 1332 aaPredicted RBP33.18■■■□□ 2.9
LSM4-201ENST00000252816 LRP6O75581 1613 aa33.17■■■□□ 2.9
LSM4-201ENST00000252816 KIAA1210Q9ULL0 1709 aa33.17■■■□□ 2.9
LSM4-201ENST00000252816 NBPF1Q3BBV0 1214 aa33.17■■■□□ 2.9
LSM4-201ENST00000252816 HIRIP3Q9BW71 556 aaPredicted RBP33.13■■■□□ 2.89
LSM4-201ENST00000252816 ADGRB2O60241 1585 aa33.13■■■□□ 2.89
LSM4-201ENST00000252816 PNPLA6Q8IY17 1366 aa33.12■■■□□ 2.89
LSM4-201ENST00000252816 MINK1Q8N4C8 1332 aaPredicted RBP33.12■■■□□ 2.89
LSM4-201ENST00000252816 ARHGEF28Q8N1W1 1705 aaKnown RBP33.12■■■□□ 2.89
LSM4-201ENST00000252816 FOXO3O43524 673 aa33.12■■■□□ 2.89
LSM4-201ENST00000252816 NPHP3Q7Z494 1330 aa33.11■■■□□ 2.89
LSM4-201ENST00000252816 PXDNQ92626 1479 aa33.08■■■□□ 2.89
LSM4-201ENST00000252816 NUTM2BA6NNL0 878 aaPredicted RBP33.08■■■□□ 2.89
LSM4-201ENST00000252816 NUTM2EB1AL46 878 aaPredicted RBP33.08■■■□□ 2.89
LSM4-201ENST00000252816 NUTM2AQ8IVF1 878 aaPredicted RBP33.08■■■□□ 2.89
LSM4-201ENST00000252816 XPCQ01831 940 aaPredicted RBP33.07■■■□□ 2.88
LSM4-201ENST00000252816 RGPD8O14715 1765 aaPredicted RBP33.06■■■□□ 2.88
LSM4-201ENST00000252816 USP32Q8NFA0 1604 aa33.04■■■□□ 2.88
LSM4-201ENST00000252816 PHF8Q9UPP1 1060 aa33.04■■■□□ 2.88
LSM4-201ENST00000252816 ANKARQ7Z5J8 1434 aa33.03■■■□□ 2.88
LSM4-201ENST00000252816 WASLO00401 505 aaPredicted RBP33.03■■■□□ 2.88
LSM4-201ENST00000252816 MEX3CQ5U5Q3 659 aaKnown RBP33.03■■■□□ 2.88
LSM4-201ENST00000252816 KIF1AQ12756 1690 aa33.03■■■□□ 2.88
LSM4-201ENST00000252816 POTEAQ6S8J7 498 aa33.01■■■□□ 2.87
LSM4-201ENST00000252816 PRR36Q9H6K5 1346 aa33.01■■■□□ 2.87
LSM4-201ENST00000252816 SOCS7O14512 581 aa32.99■■■□□ 2.87
LSM4-201ENST00000252816 TRPM1Q7Z4N2 1603 aa32.98■■■□□ 2.87
LSM4-201ENST00000252816 TULP4Q9NRJ4 1543 aa32.97■■■□□ 2.87
LSM4-201ENST00000252816 NBPF8Q3BBV2 869 aa32.96■■■□□ 2.87
LSM4-201ENST00000252816 EIF3AQ14152 1382 aaKnown RBP32.96■■■□□ 2.87
LSM4-201ENST00000252816 KRT28Q7Z3Y7 464 aa32.95■■■□□ 2.87
LSM4-201ENST00000252816 PMFBP1Q8TBY8 1022 aa32.95■■■□□ 2.87
LSM4-201ENST00000252816 COL22A1Q8NFW1 1626 aaPredicted RBP32.93■■■□□ 2.86
LSM4-201ENST00000252816 TONSLQ96HA7 1378 aa32.92■■■□□ 2.86
LSM4-201ENST00000252816 SPATA31A3Q5VYP0 1347 aa32.91■■■□□ 2.86
LSM4-201ENST00000252816 CENPJQ9HC77 1338 aaPredicted RBP32.91■■■□□ 2.86
LSM4-201ENST00000252816 CDK19Q9BWU1 502 aa32.9■■■□□ 2.86
LSM4-201ENST00000252816 PCGF6Q9BYE7 350 aa32.9■■■□□ 2.86
LSM4-201ENST00000252816 ROCK2O75116 1388 aaKnown RBP32.9■■■□□ 2.86
LSM4-201ENST00000252816 ADAMTS2O95450 1211 aa32.89■■■□□ 2.86
LSM4-201ENST00000252816 ATP7BP35670 1465 aa32.88■■■□□ 2.85
LSM4-201ENST00000252816 PSME1Q06323 249 aa32.87■■■□□ 2.85
LSM4-201ENST00000252816 NUDT16Q96DE0 195 aaKnown RBP32.87■■■□□ 2.85
LSM4-201ENST00000252816 C8orf37Q96NL8 207 aa32.87■■■□□ 2.85
LSM4-201ENST00000252816 AFF2P51816 1311 aa32.86■■■□□ 2.85
LSM4-201ENST00000252816 ZNF772Q68DY9 489 aaPredicted RBP32.86■■■□□ 2.85
LSM4-201ENST00000252816 TNS3Q68CZ2 1445 aa32.85■■■□□ 2.85
LSM4-201ENST00000252816 SBNO1A3KN83 1393 aa32.83■■■□□ 2.85
LSM4-201ENST00000252816 GPRASP1Q5JY77 1395 aa32.83■■■□□ 2.85
LSM4-201ENST00000252816 QRICH2Q9H0J4 1663 aa32.82■■■□□ 2.84
LSM4-201ENST00000252816 NGDNQ8NEJ9 315 aaKnown RBP32.79■■■□□ 2.84
LSM4-201ENST00000252816 NGLY1Q96IV0 654 aa32.79■■■□□ 2.84
LSM4-201ENST00000252816 ITSN1Q15811 1721 aa32.78■■■□□ 2.84
LSM4-201ENST00000252816 TRPM3Q9HCF6 1732 aaPredicted RBP32.77■■■□□ 2.84
LSM4-201ENST00000252816 RALGAPBQ86X10 1494 aa32.76■■■□□ 2.84
LSM4-201ENST00000252816 CCDC61Q9Y6R9 512 aa32.76■■■□□ 2.83
LSM4-201ENST00000252816 TOPAZ1Q8N9V7 1692 aa32.75■■■□□ 2.83
LSM4-201ENST00000252816 SRPK2P78362 688 aaKnown RBP32.75■■■□□ 2.83
LSM4-201ENST00000252816 LMOD2Q6P5Q4 547 aa32.75■■■□□ 2.83
LSM4-201ENST00000252816 CABP2Q9NPB3 220 aa32.75■■■□□ 2.83
LSM4-201ENST00000252816 ARHGEF10O15013 1369 aa32.73■■■□□ 2.83
LSM4-201ENST00000252816 CABLES1Q8TDN4 633 aa32.73■■■□□ 2.83
LSM4-201ENST00000252816 CARD11Q9BXL7 1154 aa32.73■■■□□ 2.83
LSM4-201ENST00000252816 PLEKHG3A1L390 1219 aa32.71■■■□□ 2.83
LSM4-201ENST00000252816 FNBP4Q8N3X1 1017 aaPredicted RBP32.71■■■□□ 2.83
LSM4-201ENST00000252816 POLR3AO14802 1390 aaPredicted RBP32.7■■■□□ 2.83
LSM4-201ENST00000252816 PLEKHG5O94827 1062 aa32.7■■■□□ 2.83
LSM4-201ENST00000252816 ACEP12821 1306 aa32.7■■■□□ 2.82
LSM4-201ENST00000252816 ALS2Q96Q42 1657 aa32.69■■■□□ 2.82
LSM4-201ENST00000252816 MARF1Q9Y4F3 1742 aaKnown RBP32.68■■■□□ 2.82
LSM4-201ENST00000252816 QTRT2Q9H974 415 aaKnown RBP32.68■■■□□ 2.82
LSM4-201ENST00000252816 RXRBP28702 533 aa32.67■■■□□ 2.82
LSM4-201ENST00000252816 USP21Q9UK80 565 aa32.67■■■□□ 2.82
LSM4-201ENST00000252816 EVC2Q86UK5 1308 aa32.67■■■□□ 2.82
LSM4-201ENST00000252816 PPIP5K1Q6PFW1 1433 aa32.66■■■□□ 2.82
LSM4-201ENST00000252816 PAK3O75914 559 aaPredicted RBP32.65■■■□□ 2.82
LSM4-201ENST00000252816 CLSPNQ9HAW4 1339 aa32.64■■■□□ 2.82
LSM4-201ENST00000252816 ABCA3Q99758 1704 aa32.63■■■□□ 2.81
LSM4-201ENST00000252816 HAP1P54257 671 aaPredicted RBP32.63■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms