RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C SGF11Q03067 99 aa3.22□□□□□ -1.89
EAR1YMR171C RDS3Q06835 107 aaPredicted RBP3.22□□□□□ -1.89
EAR1YMR171C YLR285C-AQ3E771 56 aa3.22□□□□□ -1.89
EAR1YMR171C YGR035W-AQ45U48 73 aa3.22□□□□□ -1.89
EAR1YMR171C YBL039W-BP0C268 59 aa3.21□□□□□ -1.9
EAR1YMR171C AQY2P0CD90 149 aa3.21□□□□□ -1.9
EAR1YMR171C YFL019CP43576 117 aa3.21□□□□□ -1.9
EAR1YMR171C TDA2P40045 126 aa3.2□□□□□ -1.9
EAR1YMR171C YMR320WQ04897 101 aa3.2□□□□□ -1.9
EAR1YMR171C YAL064WP39711 94 aa3.2□□□□□ -1.9
EAR1YMR171C RPL38P49167 78 aaKnown RBP3.2□□□□□ -1.9
EAR1YMR171C SFT1P43682 97 aa3.19□□□□□ -1.9
EAR1YMR171C SPC1P46965 94 aa3.19□□□□□ -1.9
EAR1YMR171C YKL183C-AQ3E765 70 aa3.19□□□□□ -1.9
EAR1YMR171C RPL33AP05744 107 aaKnown RBP3.18□□□□□ -1.9
EAR1YMR171C YFR009W-AP0C5M9 85 aa3.18□□□□□ -1.9
EAR1YMR171C YLR156WP0CE96 114 aa3.18□□□□□ -1.9
EAR1YMR171C YLR159WP0CE97 114 aa3.18□□□□□ -1.9
EAR1YMR171C YLR161WP0CE98 114 aa3.18□□□□□ -1.9
EAR1YMR171C UBC4P15731 148 aa3.18□□□□□ -1.9
EAR1YMR171C RPL33BP41056 107 aaKnown RBP3.18□□□□□ -1.9
EAR1YMR171C IGD1P43598 195 aa3.18□□□□□ -1.9
EAR1YMR171C FYV5P25585 152 aa3.17□□□□□ -1.9
EAR1YMR171C GAT4P40569 121 aa3.17□□□□□ -1.9
EAR1YMR171C EDC1P53080 175 aaPredicted RBP3.17□□□□□ -1.9
EAR1YMR171C YLR361C-AQ3E795 98 aa3.17□□□□□ -1.9
EAR1YMR171C YER187WP40102 141 aa3.16□□□□□ -1.9
EAR1YMR171C YBR230W-AQ3E762 66 aa3.16□□□□□ -1.9
EAR1YMR171C YJL127C-BQ3E828 52 aa3.16□□□□□ -1.9
EAR1YMR171C YRA2P36036 203 aaKnown RBP RIP-Chip data3.15□□□□□ -1.9not detected
EAR1YMR171C YBL081WP38180 368 aaKnown RBP3.15□□□□□ -1.9
EAR1YMR171C RSM18P40033 138 aa3.15□□□□□ -1.9
EAR1YMR171C ATP20Q12233 115 aa3.15□□□□□ -1.9
EAR1YMR171C ICS3P47034 131 aa3.14□□□□□ -1.91
EAR1YMR171C YOR314WQ12506 109 aa3.14□□□□□ -1.91
EAR1YMR171C Q0032Q9ZZX7 96 aa3.14□□□□□ -1.91
EAR1YMR171C RTC6O14464 93 aa3.14□□□□□ -1.91
EAR1YMR171C BET1P22804 142 aa3.14□□□□□ -1.91
EAR1YMR171C YCR050CP25630 102 aa3.14□□□□□ -1.91
EAR1YMR171C AIM4P38305 123 aaPredicted RBP3.14□□□□□ -1.91
EAR1YMR171C YDR115WQ04598 105 aa3.14□□□□□ -1.91
EAR1YMR171C YNL042W-BQ3E7Z2 85 aa3.14□□□□□ -1.91
EAR1YMR171C COX23P38824 151 aa3.13□□□□□ -1.91
EAR1YMR171C EDC2P40023 145 aaPredicted RBP3.13□□□□□ -1.91
EAR1YMR171C YAR023CD6VPM8 179 aa3.12□□□□□ -1.91
EAR1YMR171C SNA2P56508 79 aa3.12□□□□□ -1.91
EAR1YMR171C YGL041C-BQ3E750 60 aa3.12□□□□□ -1.91
EAR1YMR171C YLR307C-AQ3E825 87 aa3.12□□□□□ -1.91
EAR1YMR171C YER039C-AP0CD97 72 aa3.11□□□□□ -1.91
EAR1YMR171C YHR213W-BQ8TGK1 99 aa3.11□□□□□ -1.91
EAR1YMR171C PEX22P39718 180 aa3.11□□□□□ -1.91
EAR1YMR171C SBH1P52870 82 aa3.11□□□□□ -1.91
EAR1YMR171C YDR246W-AQ3E763 66 aa3.11□□□□□ -1.91
EAR1YMR171C YJL133C-AQ3E7A3 74 aa3.1□□□□□ -1.91
EAR1YMR171C RRT15Q3E811 62 aa3.1□□□□□ -1.91
EAR1YMR171C YLL066W-BQ8TGJ7 56 aa3.1□□□□□ -1.91
EAR1YMR171C SPT4P32914 102 aaPredicted RBP3.09□□□□□ -1.91
EAR1YMR171C DYN1P36022 4092 aa3.08□□□□□ -1.92
EAR1YMR171C RPL36BO14455 100 aaKnown RBP3.08□□□□□ -1.92
EAR1YMR171C YOL014WQ08110 124 aa3.08□□□□□ -1.92
EAR1YMR171C YDR182W-AQ3E796 67 aa3.08□□□□□ -1.92
EAR1YMR171C NOP10Q6Q547 58 aaPredicted RBP3.08□□□□□ -1.92
EAR1YMR171C RPL36AP05745 100 aaPredicted RBP3.08□□□□□ -1.92
EAR1YMR171C DDR2P89113 61 aa3.07□□□□□ -1.92
EAR1YMR171C ECM19Q06011 112 aa3.07□□□□□ -1.92
EAR1YMR171C YOR072WQ08486 104 aa3.07□□□□□ -1.92
EAR1YMR171C YIL102CP40488 101 aa3.06□□□□□ -1.92
EAR1YMR171C KTI11Q3E840 82 aa3.06□□□□□ -1.92
EAR1YMR171C TDA8Q6B2U8 126 aa3.06□□□□□ -1.92
EAR1YMR171C YGL193CP53097 103 aa3.05□□□□□ -1.92
EAR1YMR171C BSC4P53841 131 aa3.05□□□□□ -1.92
EAR1YMR171C YHR007C-AQ07074 71 aa3.05□□□□□ -1.92
EAR1YMR171C YLR162WQ06235 118 aa3.03□□□□□ -1.92
EAR1YMR171C YOL166W-AQ8TGJ1 51 aa3.03□□□□□ -1.92
EAR1YMR171C YBR121C-AP0C5L4 52 aa3.02□□□□□ -1.93
EAR1YMR171C YHL005CP38752 130 aa3.02□□□□□ -1.93
EAR1YMR171C LIP1Q03579 150 aa3.02□□□□□ -1.93
EAR1YMR171C YAL067W-AQ8TGK6 75 aa3.02□□□□□ -1.93
EAR1YMR171C MIC10Q96VH5 97 aa3.02□□□□□ -1.93
EAR1YMR171C KSH1Q8TGJ3 72 aa3.01□□□□□ -1.93
EAR1YMR171C RPS30AP0CX33 63 aaKnown RBP3□□□□□ -1.93
EAR1YMR171C RPS30BP0CX34 63 aaKnown RBP3□□□□□ -1.93
EAR1YMR171C AUA1P32450 94 aa3□□□□□ -1.93
EAR1YMR171C YGR164WP53291 111 aa3□□□□□ -1.93
EAR1YMR171C YLR412C-AQ3E742 68 aa3□□□□□ -1.93
EAR1YMR171C MDN1Q12019 4910 aaKnown RBP2.99□□□□□ -1.93
EAR1YMR171C YAR064WP39563 99 aa2.99□□□□□ -1.93
EAR1YMR171C YDR034C-AP0C289 58 aa2.98□□□□□ -1.93
EAR1YMR171C YOL013W-AP0C272 63 aaPredicted RBP2.98□□□□□ -1.93
EAR1YMR171C YDL012CQ12489 107 aa2.98□□□□□ -1.93
EAR1YMR171C YKL065W-AQ2V2P2 73 aa2.98□□□□□ -1.93
EAR1YMR171C YOR381W-AQ3E804 55 aa2.98□□□□□ -1.93
EAR1YMR171C YGR121W-AQ3E816 71 aa2.98□□□□□ -1.93
EAR1YMR171C RPS28BP0C0X0 67 aaKnown RBP2.97□□□□□ -1.93
EAR1YMR171C RPS28AQ3E7X9 67 aaPredicted RBP2.97□□□□□ -1.93
EAR1YMR171C YLR157W-DP0CE99 70 aa2.96□□□□□ -1.94
EAR1YMR171C YJL197C-AP0C5P0 93 aa2.95□□□□□ -1.94
EAR1YMR171C SPG1P50088 95 aa2.95□□□□□ -1.94
EAR1YMR171C SDH6Q3E785 79 aa2.95□□□□□ -1.94
EAR1YMR171C HUB1Q6Q546 73 aa2.95□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 20.6 ms