RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C MPC3P53311 146 aa1.44□□□□□ -2.18
UFD4YKL010C YOL166W-AQ8TGJ1 51 aa1.44□□□□□ -2.18
UFD4YKL010C RPL26AP05743 127 aaKnown RBP1.44□□□□□ -2.18
UFD4YKL010C AQY2P0CD90 149 aa1.44□□□□□ -2.18
UFD4YKL010C PBI2P0CT04 75 aaKnown RBP1.44□□□□□ -2.18
UFD4YKL010C SPT4P32914 102 aaPredicted RBP1.44□□□□□ -2.18
UFD4YKL010C EDC2P40023 145 aaPredicted RBP1.44□□□□□ -2.18
UFD4YKL010C RPL26BP53221 127 aaKnown RBP1.44□□□□□ -2.18
UFD4YKL010C YNL184CP53876 108 aa1.44□□□□□ -2.18
UFD4YKL010C YBR209WP38311 105 aa1.43□□□□□ -2.18
UFD4YKL010C YGL088WP53151 121 aa1.43□□□□□ -2.18
UFD4YKL010C YER175W-AQ8TGU4 54 aa1.43□□□□□ -2.18
UFD4YKL010C ECM12O13529 151 aa1.43□□□□□ -2.18
UFD4YKL010C YER039C-AP0CD97 72 aa1.43□□□□□ -2.18
UFD4YKL010C YEL045CP32616 141 aa1.43□□□□□ -2.18
UFD4YKL010C ECM19Q06011 112 aa1.43□□□□□ -2.18
UFD4YKL010C YCR050CP25630 102 aa1.42□□□□□ -2.18
UFD4YKL010C YCR001WP25347 104 aa1.42□□□□□ -2.18
UFD4YKL010C EMC6Q12431 108 aa1.42□□□□□ -2.18
UFD4YKL010C YGR164WP53291 111 aa1.42□□□□□ -2.18
UFD4YKL010C PBA1Q05778 276 aa1.42□□□□□ -2.18
UFD4YKL010C YOR034C-AQ3E735 80 aa1.42□□□□□ -2.18
UFD4YKL010C YGR121W-AQ3E816 71 aa1.42□□□□□ -2.18
UFD4YKL010C YHL018WP38744 120 aaPredicted RBP1.41□□□□□ -2.18
UFD4YKL010C YAL064WP39711 94 aa1.41□□□□□ -2.18
UFD4YKL010C GIS2P53849 153 aaKnown RBP RIP-Chip data1.41□□□□□ -2.18not detected
UFD4YKL010C YJL127C-BQ3E828 52 aa1.41□□□□□ -2.18
UFD4YKL010C YRA2P36036 203 aaKnown RBP RIP-Chip data1.41□□□□□ -2.18not detected
UFD4YKL010C YLR162WQ06235 118 aa1.41□□□□□ -2.18
UFD4YKL010C YGL041C-BQ3E750 60 aa1.41□□□□□ -2.18
UFD4YKL010C YKL183C-AQ3E765 70 aa1.41□□□□□ -2.18
UFD4YKL010C ICS3P47034 131 aa1.41□□□□□ -2.18
UFD4YKL010C YOL014WQ08110 124 aa1.41□□□□□ -2.18
UFD4YKL010C RPL36BO14455 100 aaKnown RBP1.4□□□□□ -2.18
UFD4YKL010C RPL36AP05745 100 aaPredicted RBP1.4□□□□□ -2.18
UFD4YKL010C YLR156WP0CE96 114 aa1.4□□□□□ -2.19
UFD4YKL010C YLR159WP0CE97 114 aa1.4□□□□□ -2.19
UFD4YKL010C YLR161WP0CE98 114 aa1.4□□□□□ -2.19
UFD4YKL010C SPG1P50088 95 aa1.4□□□□□ -2.19
UFD4YKL010C EDC1P53080 175 aaPredicted RBP1.4□□□□□ -2.19
UFD4YKL010C ATP20Q12233 115 aa1.4□□□□□ -2.19
UFD4YKL010C YJR085CP47131 105 aaKnown RBP1.4□□□□□ -2.19
UFD4YKL010C DDR2P89113 61 aa1.4□□□□□ -2.19
UFD4YKL010C YLR412C-AQ3E742 68 aa1.4□□□□□ -2.19
UFD4YKL010C RSM18P40033 138 aa1.39□□□□□ -2.19
UFD4YKL010C MIC10Q96VH5 97 aa1.39□□□□□ -2.19
UFD4YKL010C TSC3Q3E790 80 aa1.39□□□□□ -2.19
UFD4YKL010C YHR213W-BQ8TGK1 99 aa1.39□□□□□ -2.19
UFD4YKL010C HHF1P02309 103 aaKnown RBP1.39□□□□□ -2.19
UFD4YKL010C YER187WP40102 141 aa1.39□□□□□ -2.19
UFD4YKL010C YOR304C-AO14468 76 aa1.38□□□□□ -2.19
UFD4YKL010C YOR314WQ12506 109 aa1.38□□□□□ -2.19
UFD4YKL010C PEX22P39718 180 aa1.38□□□□□ -2.19
UFD4YKL010C COF1Q03048 143 aaKnown RBP1.38□□□□□ -2.19
UFD4YKL010C YHR073W-AP0C5N7 58 aa1.38□□□□□ -2.19
UFD4YKL010C YAR1P46683 200 aa1.38□□□□□ -2.19
UFD4YKL010C YOR072WQ08486 104 aa1.38□□□□□ -2.19
UFD4YKL010C YJL133C-AQ3E7A3 74 aa1.38□□□□□ -2.19
UFD4YKL010C BSC4P53841 131 aa1.37□□□□□ -2.19
UFD4YKL010C YLR285C-AQ3E771 56 aa1.37□□□□□ -2.19
UFD4YKL010C YOL097W-AQ3E7Y9 61 aa1.37□□□□□ -2.19
UFD4YKL010C YGR039WP53225 103 aa1.37□□□□□ -2.19
UFD4YKL010C RPS28BP0C0X0 67 aaKnown RBP1.36□□□□□ -2.19
UFD4YKL010C BET1P22804 142 aa1.36□□□□□ -2.19
UFD4YKL010C AIM4P38305 123 aaPredicted RBP1.36□□□□□ -2.19
UFD4YKL010C TDA2P40045 126 aa1.36□□□□□ -2.19
UFD4YKL010C YLR361C-AQ3E795 98 aa1.36□□□□□ -2.19
UFD4YKL010C RPS28AQ3E7X9 67 aaPredicted RBP1.36□□□□□ -2.19
UFD4YKL010C NOP10Q6Q547 58 aaPredicted RBP1.36□□□□□ -2.19
UFD4YKL010C YOL013W-AP0C272 63 aaPredicted RBP1.36□□□□□ -2.19
UFD4YKL010C SMD1Q02260 146 aaPredicted RBP1.36□□□□□ -2.19
UFD4YKL010C YDR029WQ12111 104 aa1.36□□□□□ -2.19
UFD4YKL010C MDN1Q12019 4910 aaKnown RBP1.36□□□□□ -2.19
UFD4YKL010C SBH1P52870 82 aa1.36□□□□□ -2.19
UFD4YKL010C YDL012CQ12489 107 aa1.36□□□□□ -2.19
UFD4YKL010C RRT15Q3E811 62 aa1.36□□□□□ -2.19
UFD4YKL010C MMS2P53152 137 aa1.35□□□□□ -2.19
UFD4YKL010C YKL065W-AQ2V2P2 73 aa1.35□□□□□ -2.19
UFD4YKL010C YAR023CD6VPM8 179 aa1.35□□□□□ -2.19
UFD4YKL010C LIP1Q03579 150 aa1.35□□□□□ -2.19
UFD4YKL010C KTI11Q3E840 82 aa1.35□□□□□ -2.19
UFD4YKL010C Q0032Q9ZZX7 96 aa1.34□□□□□ -2.19
UFD4YKL010C YLR255CO13574 117 aa1.34□□□□□ -2.2
UFD4YKL010C YBL112CQ3E7Y4 105 aa1.33□□□□□ -2.2
UFD4YKL010C YHR125WP38831 101 aa1.33□□□□□ -2.2
UFD4YKL010C YAR064WP39563 99 aa1.33□□□□□ -2.2
UFD4YKL010C SNA2P56508 79 aa1.33□□□□□ -2.2
UFD4YKL010C YHR007C-AQ07074 71 aa1.33□□□□□ -2.2
UFD4YKL010C KSH1Q8TGJ3 72 aa1.33□□□□□ -2.2
UFD4YKL010C YHL005CP38752 130 aa1.32□□□□□ -2.2
UFD4YKL010C LCL1Q02786 101 aa1.32□□□□□ -2.2
UFD4YKL010C YDR034C-AP0C289 58 aa1.31□□□□□ -2.2
UFD4YKL010C YPR153WQ06537 140 aa1.31□□□□□ -2.2
UFD4YKL010C YBR121C-AP0C5L4 52 aa1.3□□□□□ -2.2
UFD4YKL010C YBR027CP38220 110 aa1.3□□□□□ -2.2
UFD4YKL010C RPS30AP0CX33 63 aaKnown RBP1.3□□□□□ -2.2
UFD4YKL010C RPS30BP0CX34 63 aaKnown RBP1.3□□□□□ -2.2
UFD4YKL010C RPL38P49167 78 aaKnown RBP1.3□□□□□ -2.2
UFD4YKL010C LCL2Q08045 131 aa1.29□□□□□ -2.2
UFD4YKL010C YMR230W-AQ3E7B5 62 aa1.29□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms