RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TRMT5Q32P41 509 aaKnown RBP13.09□□□□□ -0.31
LIG1-221ENST00000613670 MSS51Q4VC12 460 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 KRT27Q7Z3Y8 459 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 USP6NLQ92738 828 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 PTPRN2Q92932 1015 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 CEP41Q9BYV8 373 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 ANLNQ9NQW6 1124 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 LRP5O75197 1615 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 PRR5-ARHGAP8B1AHC4 643 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 PROCP04070 461 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 HMGB2P26583 209 aaKnown RBP13.09□□□□□ -0.31
LIG1-221ENST00000613670 KLRC2P26717 231 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 ARHGAP8P85298 464 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 SURF1Q15526 300 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 CNGA3Q16281 694 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 EFHC2Q5JST6 749 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 SH2D4BQ5SQS7 431 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 RSBN1LQ6PCB5 846 aaPredicted RBP13.09□□□□□ -0.31
LIG1-221ENST00000613670 ANKS1BQ7Z6G8 1248 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 GSTCDQ8NEC7 633 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 OR6B3Q8NGW1 331 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 HIC2Q96JB3 615 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 WRNIP1Q96S55 665 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 TOGARAM1Q9Y4F4 1720 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 DOCK2Q92608 1830 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 ENO3P13929 434 aaPredicted RBP13.08□□□□□ -0.31
LIG1-221ENST00000613670 CRADDP78560 199 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 C15orf59Q2T9L4 293 aaPredicted RBP13.08□□□□□ -0.31
LIG1-221ENST00000613670 DENND5BQ6ZUT9 1274 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 ARHGAP18Q8N392 663 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 RNF148Q8N7C7 305 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 CEP120Q8N960 986 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 RXFP2Q8WXD0 754 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 PRR11Q96HE9 360 aaPredicted RBP13.08□□□□□ -0.31
LIG1-221ENST00000613670 SERAC1Q96JX3 654 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 OLFM3Q96PB7 478 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 AS3MTQ9HBK9 375 aa13.08□□□□□ -0.31
LIG1-221ENST00000613670 XAB2Q9HCS7 855 aaKnown RBP13.08□□□□□ -0.31
LIG1-221ENST00000613670 CCDC88AQ3V6T2 1871 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GOLGA8QA0A0J9YX86 632 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GOLGA8OA6NCC3 632 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 E9PBE3 544 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GOLGA8NF8WBI6 632 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 KLHL41O60662 606 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 SPAG6O75602 509 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 TMEM63AO94886 807 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 OATP04181 439 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 RBL1P28749 1068 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GSTT1P30711 240 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 CDKN2BP42772 138 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GPX6P59796 221 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 IFRD2Q12894 506 aaPredicted RBP13.08□□□□□ -0.32
LIG1-221ENST00000613670 TAF5Q15542 800 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 EFHC1Q5JVL4 640 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 ZNF354CQ86Y25 554 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 DEFB107AQ8IZN7 70 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 CCNYL1Q8N7R7 359 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 SH3TC2Q8TF17 1288 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 LPAR1Q92633 364 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 RNF34Q969K3 372 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 ZNF212Q9UDV6 495 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 CYP1A1P04798 512 aaPredicted RBP13.08□□□□□ -0.32
LIG1-221ENST00000613670 ITGB3P05106 788 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 C6orf222P0C671 652 aaPredicted RBP13.08□□□□□ -0.32
LIG1-221ENST00000613670 ANPEPP15144 967 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GM2AP17900 193 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GPD1P21695 349 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 ARL1P40616 181 aaPredicted RBP13.08□□□□□ -0.32
LIG1-221ENST00000613670 ROR2Q01974 943 aaKnown RBP13.08□□□□□ -0.32
LIG1-221ENST00000613670 FASTKD1Q53R41 847 aaKnown RBP13.08□□□□□ -0.32
LIG1-221ENST00000613670 OLFML2BQ68BL8 750 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 WDR35Q9P2L0 1181 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 GRID1Q9ULK0 1009 aa13.08□□□□□ -0.32
LIG1-221ENST00000613670 ATP9BO43861 1147 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 MOGSQ13724 837 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 SLC39A4Q6P5W5 647 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 SAMD3Q8N6K7 520 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 ZNF398Q8TD17 642 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 PGBD4Q96DM1 585 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 TLK1Q9UKI8 766 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 SOX13Q9UN79 622 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 FAF1Q9UNN5 650 aaPredicted RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 ITGB4P16144 1822 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 LIN7AO14910 233 aaPredicted RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 DHX15O43143 795 aaKnown RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 LYPLA1O75608 230 aaPredicted RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 MX2P20592 715 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 IYDQ6PHW0 289 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 CES3Q6UWW8 571 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 ULK2Q8IYT8 1036 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 TRIML2Q8N7C3 387 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 NETO2Q8NC67 525 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 ZNF333Q96JL9 665 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 MPHOSPH6Q99547 160 aaKnown RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 ACAD9Q9H845 621 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 TJP2Q9UDY2 1190 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 TRPC5Q9UL62 973 aaPredicted RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 LRRC42Q9Y546 428 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 C4BPAP04003 597 aaKnown RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 SNX16P57768 344 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms