RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SLC2A14Q8TDB8 520 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 UBLCP1Q8WVY7 318 aaPredicted RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 CENPTQ96BT3 561 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PGM2Q96G03 612 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 HNRNPABQ99729 332 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 LPIN3Q9BQK8 851 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 MIS12Q9H081 205 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 LRRC19Q9H756 370 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 MRPL47Q9HD33 250 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 HCSTQ9UBK5 93 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 LCMT1Q9UIC8 334 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 STRIP2Q9ULQ0 834 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 ATMINO43313 823 aaPredicted RBP12.27□□□□□ -0.45
VRK3-223ENST00000601341 OAZ2O95190 189 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 RRM1P23921 792 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 ADORA2BP29275 332 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 CCT5P48643 541 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 BCAT1P54687 386 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 SNX16P57768 344 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 TSPY1Q01534 308 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 BST2Q10589 180 aaKnown RBP12.27□□□□□ -0.45
VRK3-223ENST00000601341 PDCLQ13371 301 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 BTG3Q14201 252 aaPredicted RBP12.27□□□□□ -0.45
VRK3-223ENST00000601341 MDH1BQ5I0G3 518 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 TMEM240Q5SV17 173 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 SPOUT1Q5T280 376 aaKnown RBP12.27□□□□□ -0.45
VRK3-223ENST00000601341 FAM171A1Q5VUB5 890 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 KIAA0319Q5VV43 1072 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 FUT10Q6P4F1 479 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 TTC30AQ86WT1 665 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 SLC13A5Q86YT5 568 aaPredicted RBP12.27□□□□□ -0.45
VRK3-223ENST00000601341 SH2D3CQ8N5H7 860 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 MYCBPAPQ8TBZ2 947 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 YME1L1Q96TA2 773 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 RTP3Q9BQQ7 232 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 NUP85Q9BW27 656 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 CWH43Q9H720 699 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 SYNCQ9H7C4 482 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 RC3H2Q9HBD1 1191 aaKnown RBP12.27□□□□□ -0.45
VRK3-223ENST00000601341 HOMER3Q9NSC5 361 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 PARVAQ9NVD7 372 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 MARCH5Q9NX47 278 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 PCDH10Q9P2E7 1040 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 CYTH4Q9UIA0 394 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 NR2E1Q9Y466 385 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 SCINQ9Y6U3 715 aa12.27□□□□□ -0.45
VRK3-223ENST00000601341 MYBPHLA2RUH7 354 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 NT5C1B-RDH14C9J2C7 533 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 FSCN2O14926 492 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 SYN1P17600 705 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 FGFR3P22607 806 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 TKTP29401 623 aaKnown RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 GABRB2P47870 512 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 PPP2R2AP63151 447 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 PLCB3Q01970 1234 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 MAPRE1Q15691 268 aaKnown RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 PTPN20Q4JDL3 420 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 C2CD6Q53TS8 623 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 INTS6LQ5JSJ4 861 aaKnown RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 PLEKHA7Q6IQ23 1121 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 TMCO2Q7Z6W1 182 aaPredicted RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 FUKQ8N0W3 1084 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 IPO4Q8TEX9 1081 aaKnown RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 STK32AQ8WU08 396 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 SLC35F5Q8WV83 523 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 MAGOHBQ96A72 148 aaKnown RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 TLCD1Q96CP7 247 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 C18orf8Q96DM3 657 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 ABHD8Q96I13 439 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 CPXM1Q96SM3 734 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 LBHD1Q9BQE6 289 aaPredicted RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 GPR62Q9BZJ7 368 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 STMN4Q9H169 189 aaPredicted RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 CRTAC1Q9NQ79 661 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 WDR35Q9P2L0 1181 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 CHORDC1Q9UHD1 332 aaPredicted RBP12.26□□□□□ -0.45
VRK3-223ENST00000601341 LTBP2Q14767 1821 aa12.26□□□□□ -0.45
VRK3-223ENST00000601341 SPOPO43791 374 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 GJB5O95377 273 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 LAG3P18627 525 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 PBX3P40426 434 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 PMS2P54278 862 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 PDE4CQ08493 712 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 MESDQ14696 234 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 FAM171BQ6P995 826 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 CCDC137Q6PK04 289 aaKnown RBP12.25□□□□□ -0.45
VRK3-223ENST00000601341 KCNT2Q6UVM3 1135 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 CEP57Q86XR8 500 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 KRT35Q92764 455 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 DPF3Q92784 378 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 ZBTB9Q96C00 473 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 PCED1BQ96HM7 432 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 ZNF558Q96NG5 402 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 TRIM51Q9BSJ1 452 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 MED10Q9BTT4 135 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 DUSP16Q9BY84 665 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 MTIF3Q9H2K0 278 aaKnown RBP12.25□□□□□ -0.45
VRK3-223ENST00000601341 GRHL1Q9NZI5 618 aa12.25□□□□□ -0.45
VRK3-223ENST00000601341 ZMYND8Q9ULU4 1186 aaPredicted RBP12.25□□□□□ -0.45
VRK3-223ENST00000601341 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms