RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TMPRSS6Q8IU80 811 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 NUDCD3Q8IVD9 361 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 JOSD2Q8TAC2 188 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 RBAKQ9NYW8 714 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 RIPK3Q9Y572 518 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 SNCAIPQ9Y6H5 919 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 RBP3P10745 1247 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 ATXN3P54252 364 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.11■□□□□ 0.65
UPF1-210ENST00000600689 TCHHL1Q5QJ38 904 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 SWSAP1Q6NVH7 229 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 C16orf46Q6P387 395 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 DENND5BQ6ZUT9 1274 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 MICALL2Q8IY33 904 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 NAT8LQ8N9F0 302 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 ZNF668Q96K58 619 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 ETNK2Q9NVF9 386 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 FARP1Q9Y4F1 1045 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 MAPTP10636 758 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 BAG6P46379 1132 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 PDE1BQ01064 536 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 DALRD3Q5D0E6 543 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 DARS2Q6PI48 645 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 ENOSF1Q7L5Y1 443 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 POLNQ7Z5Q5 900 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 ZBTB33Q86T24 672 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 SATL1Q86VE3 508 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 ZFAND2BQ8WV99 257 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 E2F7Q96AV8 911 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 SPATA16Q9BXB7 569 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 RPAP3Q9H6T3 665 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 HACL1Q9UJ83 578 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 AGO2Q9UKV8 859 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 RPL26L1Q9UNX3 145 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 MAD1L1Q9Y6D9 718 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 ETV4P43268 484 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 DEUP1Q05D60 604 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 GRAMD1BQ3KR37 738 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 ZACNQ401N2 412 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 LIN52Q52LA3 116 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 SFT2D3Q587I9 215 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 KCTD6Q8NC69 237 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 TARS2Q9BW92 718 aaKnown RBP19.1■□□□□ 0.65
UPF1-210ENST00000600689 CST3P01034 146 aaPredicted RBP19.1■□□□□ 0.65
UPF1-210ENST00000600689 ITGAVP06756 1048 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 GMPRP36959 345 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 FAF2Q96CS3 445 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 DEFB129Q9H1M3 183 aa19.1■□□□□ 0.65
UPF1-210ENST00000600689 TAS1R3Q7RTX0 852 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 SPATA18Q8TC71 538 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 TCHPQ9BT92 498 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 POLR3FQ9H1D9 316 aaPredicted RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 PIH1D1Q9NWS0 290 aaKnown RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 STRIP2Q9ULQ0 834 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 H7C0C1 242 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 ZNF862O60290 1169 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 MMP8P22894 467 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 PEX2P28328 305 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 ATP5OP48047 213 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 GMPSP49915 693 aaPredicted RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 AQP4P55087 323 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 NCOA4Q13772 614 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 PGM5Q15124 567 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 PDCD2Q16342 344 aaPredicted RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 CDO1Q16878 200 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 ZNF677Q86XU0 584 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 SLC35B2Q8TB61 432 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 ATG4CQ96DT6 458 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 RAB6BQ9NRW1 208 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 DRG1Q9Y295 367 aaKnown RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 UBIAD1Q9Y5Z9 338 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 STAM2O75886 525 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 C4BPAP04003 597 aaKnown RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 SCNN1BP51168 640 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 DLG1Q12959 904 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 TRIP10Q15642 601 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 SLC5A9Q2M3M2 681 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 TBC1D25Q3MII6 688 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 RAB6CQ53S08 254 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 PHF13Q86YI8 300 aaPredicted RBP19.09■□□□□ 0.65
UPF1-210ENST00000600689 AGR3Q8TD06 166 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 LPAR1Q92633 364 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 RAB6CQ9H0N0 254 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 VPS33BQ9H267 617 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 TAGLN3Q9UI15 199 aa19.09■□□□□ 0.65
UPF1-210ENST00000600689 MYOCOSA0A1B0GUC4 107 aa19.08■□□□□ 0.65
UPF1-210ENST00000600689 OSTNP61366 133 aa19.08■□□□□ 0.65
UPF1-210ENST00000600689 NKD2Q969F2 451 aaPredicted RBP19.08■□□□□ 0.65
UPF1-210ENST00000600689 ALKBH8Q96BT7 664 aaKnown RBP19.08■□□□□ 0.65
UPF1-210ENST00000600689 RMDN3Q96TC7 470 aa19.08■□□□□ 0.65
UPF1-210ENST00000600689 SLC17A6Q9P2U8 582 aa19.08■□□□□ 0.65
UPF1-210ENST00000600689 NXF1Q9UBU9 619 aaKnown RBP19.08■□□□□ 0.65
UPF1-210ENST00000600689 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.08■□□□□ 0.64
UPF1-210ENST00000600689 WDR64B1ANS9 1081 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 PMM2O15305 246 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 TM7SF2O76062 418 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 C1QBPQ07021 282 aaKnown RBP19.08■□□□□ 0.64
UPF1-210ENST00000600689 KRT72Q14CN4 511 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 MCF2L2Q86YR7 1114 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 KIAA0319LQ8IZA0 1049 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms