RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DUSP16Q9BY84 665 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 UBXN6Q9BZV1 441 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 FBXO44Q9H4M3 255 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 BRD9Q9H8M2 597 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 TDP1Q9NUW8 608 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 ANO10Q9NW15 660 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 CA14Q9ULX7 337 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 DPYSL4O14531 572 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 ZNF263O14978 683 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 EEF1GP26641 437 aaKnown RBP17.1■□□□□ 0.33
LSM4-206ENST00000600289 GDI1P31150 447 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 MTIF2P46199 727 aaKnown RBP17.1■□□□□ 0.33
LSM4-206ENST00000600289 TUBP50607 506 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 MAP3K7CLP57077 242 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 PLCB2Q00722 1185 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 LRMPQ12912 555 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 MLF2Q15773 248 aaPredicted RBP17.1■□□□□ 0.33
LSM4-206ENST00000600289 ENOSF1Q7L5Y1 443 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 ARHGEF19Q8IW93 802 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 PPM1KQ8N3J5 372 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 KIAA1958Q8N8K9 716 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 RUBCNQ92622 972 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 USP13Q92995 863 aaPredicted RBP17.1■□□□□ 0.33
LSM4-206ENST00000600289 MSANTD3Q96H12 275 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 HEXIM2Q96MH2 286 aaKnown RBP17.1■□□□□ 0.33
LSM4-206ENST00000600289 LRRC3BQ96PB8 259 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 TMEM63CQ9P1W3 806 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 CNTN6Q9UQ52 1028 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 GPR179Q6PRD1 2367 aa17.1■□□□□ 0.33
LSM4-206ENST00000600289 ASPMQ8IZT6 3477 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 C2orf78A6NCI8 922 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 OAS1P00973 400 aaKnown RBP17.09■□□□□ 0.33
LSM4-206ENST00000600289 VDRP11473 427 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 GLULP15104 373 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 ZNF132P52740 706 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 SLC7A9P82251 487 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 USP4Q13107 963 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 SLC44A4Q53GD3 710 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 SGO2Q562F6 1265 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 CDKAL1Q5VV42 579 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 TRIM65Q6PJ69 517 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 GBP6Q6ZN66 633 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 YAF2Q8IY57 180 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 ANKRD52Q8NB46 1076 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 SCAMP5Q8TAC9 235 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 FBXO32Q969P5 355 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 SLC22A12Q96S37 553 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 HINFPQ9BQA5 517 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 ARHGAP26Q9UNA1 814 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 CCL26Q9Y258 94 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 NFE2L3Q9Y4A8 694 aa17.09■□□□□ 0.33
LSM4-206ENST00000600289 KCNJ18B7U540 433 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 CKMP06732 381 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 PTMSP20962 102 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 KCNJ12Q14500 433 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 STILQ15468 1287 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 ZNF77Q15935 545 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 VWA3BQ502W6 1294 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 MIIPQ5JXC2 388 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 TMEM270Q6UE05 265 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 KAT5Q92993 513 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 KREMEN1Q96MU8 473 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 TUBGCP2Q9BSJ2 902 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 OSBPL6Q9BZF3 934 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 SMG9Q9H0W8 520 aaKnown RBP17.08■□□□□ 0.32
LSM4-206ENST00000600289 NDST4Q9H3R1 872 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 TBC1D17Q9HA65 648 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 TRPC7Q9HCX4 862 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 SAMSN1Q9NSI8 373 aaKnown RBP17.08■□□□□ 0.32
LSM4-206ENST00000600289 THG1LQ9NWX6 298 aaKnown RBP17.08■□□□□ 0.32
LSM4-206ENST00000600289 APEX2Q9UBZ4 518 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 SCML2Q9UQR0 700 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 USP3Q9Y6I4 520 aa17.08■□□□□ 0.32
LSM4-206ENST00000600289 CACNA1IQ9P0X4 2223 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 O00370 1275 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 HDCP19113 662 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 KIF11P52732 1056 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 ATXN1P54253 815 aaKnown RBP17.07■□□□□ 0.32
LSM4-206ENST00000600289 BCAT1P54687 386 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 SLC8A3P57103 927 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 EXOC3L4Q17RC7 722 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 TCP11X2Q5H9J9 407 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 RAB41Q5JT25 222 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 C1orf228Q6PIY5 440 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 C11orf57Q6ZUT1 292 aaPredicted RBP17.07■□□□□ 0.32
LSM4-206ENST00000600289 RRAGAQ7L523 313 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 GPRIN1Q7Z2K8 1008 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 CREBRFQ8IUR6 639 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 ARL14EPQ8N8R7 260 aaPredicted RBP17.07■□□□□ 0.32
LSM4-206ENST00000600289 FAM83CQ9BQN1 747 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 TSPAN16Q9UKR8 245 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 PCDHB4Q9Y5E5 795 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 KIAA1549LQ6ZVL6 1849 aa17.07■□□□□ 0.32
LSM4-206ENST00000600289 KANSL1LA0AUZ9 987 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 SHISA7A6NL88 538 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 XPO1O14980 1071 aaKnown RBP17.06■□□□□ 0.32
LSM4-206ENST00000600289 SLC9A1P19634 815 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 PON1P27169 355 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 PSEN1P49768 467 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 BST2Q10589 180 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms