RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 KRBA1A5PL33 1030 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 SMTNL1A8MU46 457 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 CYP26A1O43174 497 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 TEX33O43247 280 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 PDGFBP01127 241 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 PFKLP17858 780 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 TRIM21P19474 475 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 PLA2G4AP47712 749 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 PPP3CCP48454 512 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 RPL34P49207 117 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 BST2Q10589 180 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 ARL14EPQ8N8R7 260 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 ZFRQ96KR1 1074 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 RTN4Q9NQC3 1192 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 TRPM5Q9NZQ8 1165 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 CHORDC1Q9UHD1 332 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 CYTH4Q9UIA0 394 aa20.58■□□□□ 0.89
SHKBP1-221ENST00000599833 DMDP11532 3685 aa20.58■□□□□ 0.88
SHKBP1-221ENST00000599833 TMEM221A6NGB7 291 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 M0R296 226 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 KRT5P13647 590 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 TCF3P15923 654 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 PSMC3P17980 439 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 GPD2P43304 727 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 USP4Q13107 963 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 DRAP1Q14919 205 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 SYCP1Q15431 976 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 ZNF77Q15935 545 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 MEA1Q16626 185 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 PM20D1Q6GTS8 502 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 PMF1Q6P1K2 205 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 CCDC186Q7Z3E2 898 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 KMT2EQ8IZD2 1858 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 PDZD8Q8NEN9 1154 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 DEPDC1BQ8WUY9 529 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 KCTD13Q8WZ19 329 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 SLITRK1Q96PX8 696 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 DNAI2Q9GZS0 605 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 FBXO44Q9H4M3 255 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 F5P12259 2224 aa20.57■□□□□ 0.88
SHKBP1-221ENST00000599833 A0A1B0GTH6 734 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 SETSIPP0DME0 302 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 TUBP50607 506 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 JAM2P57087 298 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 SLC7A9P82251 487 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 STILQ15468 1287 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 DENND1BQ6P3S1 775 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 BMP8AQ7Z5Y6 402 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 WDTC1Q8N5D0 677 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 ZNF606Q8WXB4 792 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 SECISBP2LQ93073 1101 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 E2F7Q96AV8 911 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 NAP1L5Q96NT1 182 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 CCSER2Q9H7U1 834 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 TRPC7Q9HCX4 862 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 TDP1Q9NUW8 608 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 WNT16Q9UBV4 365 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 ARHGAP26Q9UNA1 814 aa20.56■□□□□ 0.88
SHKBP1-221ENST00000599833 TRAV19A0A0A6YYK7 116 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 F8VZ95 297 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 PES1O00541 588 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 COCHO43405 550 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 RFX1P22670 979 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 GNA15P30679 374 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 HFE2Q6ZVN8 426 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 SLC47A2Q86VL8 602 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 CELF5Q8N6W0 485 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 NDRG1Q92597 394 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 STK33Q9BYT3 514 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 KIF9Q9HAQ2 790 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 TRPV5Q9NQA5 729 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 CYLDQ9NQC7 956 aa20.55■□□□□ 0.88
SHKBP1-221ENST00000599833 A0A1W2PQH9 124 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 M0QYV0 167 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 HDCP19113 662 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 CDK11BP21127 795 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 AVPR1AP37288 418 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 TKTL1P51854 596 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 UBXN1Q04323 297 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 FKBP15Q5T1M5 1219 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 SCML4Q8N228 414 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 ZNF276Q8N554 614 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 BPIFB1Q8TDL5 484 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 DDX1Q92499 740 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 FAM83CQ9BQN1 747 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 TRMT61BQ9BVS5 477 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 ULBP1Q9BZM6 244 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 FAM207AQ9NSI2 230 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 HESX1Q9UBX0 185 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 PCDHGC3Q9UN70 934 aa20.54■□□□□ 0.88
SHKBP1-221ENST00000599833 CHADO15335 359 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 GREM1O60565 184 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 CAVIN2O95810 425 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 USP17L7P0C7H9 530 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 GDI1P31150 447 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 CWF19L1Q69YN2 538 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 LRSAM1Q6UWE0 723 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 DNASE1L2Q92874 299 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 WBP2Q969T9 261 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms