RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 RPL34P49207 117 aaKnown RBP20.58■□□□□ 0.88
CLIP3-206ENST00000593074 MMRN1Q13201 1228 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 TFDP2Q14188 446 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 FASTKD3Q14CZ7 662 aaKnown RBP20.58■□□□□ 0.88
CLIP3-206ENST00000593074 NOMO1Q15155 1222 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 FAM47CQ5HY64 1035 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 VSTM1Q6UX27 236 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 PAXIP1Q6ZW49 1069 aaPredicted RBP20.58■□□□□ 0.88
CLIP3-206ENST00000593074 CENPUQ71F23 418 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 YTHDF3Q7Z739 585 aaKnown RBP20.58■□□□□ 0.88
CLIP3-206ENST00000593074 VSIG1Q86XK7 387 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 CPT1BQ92523 772 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 TBCBQ99426 244 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 UPF3AQ9H1J1 476 aaKnown RBP20.58■□□□□ 0.88
CLIP3-206ENST00000593074 C10orf88Q9H8K7 445 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 DDX20Q9UHI6 824 aaKnown RBP20.58■□□□□ 0.88
CLIP3-206ENST00000593074 GTF2IRD1Q9UHL9 959 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 ANKRD65E5RJM6 399 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 FGFR1P11362 822 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 RPL22P35268 128 aaKnown RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 SCNN1AP37088 669 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 BCAT1P54687 386 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 MRPS6P82932 125 aaKnown RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 BST2Q10589 180 aaKnown RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 PDK2Q15119 407 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 BOLA3Q53S33 107 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 TWF2Q6IBS0 349 aaKnown RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 RSPH3Q86UC2 560 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 FAM228AQ86W67 206 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 UNC45BQ8IWX7 931 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 SCUBE3Q8IX30 993 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 NAT8LQ8N9F0 302 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 ANKRD52Q8NB46 1076 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 SPATA18Q8TC71 538 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 FAM172AQ8WUF8 416 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 HHIPL1Q96JK4 782 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 CYLDQ9NQC7 956 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 HCRTO43612 131 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 RARBP10826 455 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 TAF6P49848 677 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 ATP11AP98196 1134 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 SOX4Q06945 474 aaPredicted RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 C6orf89Q6UWU4 347 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 MAP7D3Q8IWC1 876 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 SMG8Q8ND04 991 aaKnown RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 RNF157Q96PX1 679 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 NCAPGQ9BPX3 1015 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 MAK16Q9BXY0 300 aaKnown RBP20.57■□□□□ 0.88
CLIP3-206ENST00000593074 NAALADL1Q9UQQ1 740 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 ACTL7BQ9Y614 415 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 CDY2AQ9Y6F7 541 aa20.57■□□□□ 0.88
CLIP3-206ENST00000593074 TMEM120BA0PK00 339 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 SMAPO00193 183 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 TRIM66O15016 1216 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 SEPT4O43236 478 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 RBP3P10745 1247 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 CCDC130P13994 396 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 RDXP35241 583 aaKnown RBP20.56■□□□□ 0.88
CLIP3-206ENST00000593074 GNL1P36915 607 aaPredicted RBP20.56■□□□□ 0.88
CLIP3-206ENST00000593074 HIF1AQ16665 826 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 SV2CQ496J9 727 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 ARCQ7LC44 396 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 TDRPQ86YL5 185 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 CYP4X1Q8N118 509 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 LPIN3Q9BQK8 851 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 NGRNQ9NPE2 291 aaKnown RBP20.56■□□□□ 0.88
CLIP3-206ENST00000593074 TRPV2Q9Y5S1 764 aa20.56■□□□□ 0.88
CLIP3-206ENST00000593074 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.56■□□□□ 0.88
CLIP3-206ENST00000593074 TMEM88BA6NKF7 163 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 ZNF487B1APH4 448 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 MDM4O15151 490 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 CAPN15O75808 1086 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 DESP17661 470 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 PTPN9P43378 593 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 ROR1Q01973 937 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 ANKRD22Q5VYY1 191 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 GDF6Q6KF10 455 aaPredicted RBP20.55■□□□□ 0.88
CLIP3-206ENST00000593074 SLC26A9Q7LBE3 791 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 ZBED8Q8IZ13 594 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 FAM71DQ8N9W8 422 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 ARRDC4Q8NCT1 418 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 APPL2Q8NEU8 664 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 PRMT1Q99873 361 aaKnown RBP20.55■□□□□ 0.88
CLIP3-206ENST00000593074 C11orf84Q9BUA3 381 aaPredicted RBP20.55■□□□□ 0.88
CLIP3-206ENST00000593074 B3GNT5Q9BYG0 378 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 EXOC1LA0A1B0GW35 172 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 CREB1P16220 341 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 IL4RP24394 825 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 LMO2P25791 158 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 GCAP28676 217 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 PRKCZQ05513 592 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 PDIA2Q13087 525 aaKnown RBP20.55■□□□□ 0.88
CLIP3-206ENST00000593074 KRT81Q14533 505 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 NPNTQ6UXI9 565 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 CPLX4Q7Z7G2 160 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 P3H4Q92791 437 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 SEC16BQ96JE7 1060 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 SNX25Q9H3E2 840 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 GOLGA2P5Q9HBQ8 144 aa20.55■□□□□ 0.88
CLIP3-206ENST00000593074 E7ESA3 106 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms