RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MFAP3P55082 362 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 STARD6P59095 220 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 TNK2Q07912 1038 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 USP4Q13107 963 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 ZNF268Q14587 947 aaPredicted RBP20.56■□□□□ 0.88
SS18-209ENST00000578595 VWA3BQ502W6 1294 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 HECTD3Q5T447 861 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 TRIM68Q6AZZ1 485 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 GJB7Q6PEY0 223 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 PJA1Q8NG27 643 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 ENOX1Q8TC92 643 aaKnown RBP20.56■□□□□ 0.88
SS18-209ENST00000578595 EBF3Q9H4W6 596 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 CCSER2Q9H7U1 834 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 PNPLA8Q9NP80 782 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 LTB4R2Q9NPC1 389 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 TAB2Q9NYJ8 693 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 ARHGAP26Q9UNA1 814 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 FAM170BA6NMN3 283 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 M0QYV0 167 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 MAN2B1O00754 1011 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 CALCAP01258 141 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 IRF1P10914 325 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 PFKLP17858 780 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 TYRO3Q06418 890 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 BST2Q10589 180 aaKnown RBP20.55■□□□□ 0.88
SS18-209ENST00000578595 ZNF77Q15935 545 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 PIGZQ86VD9 579 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 ANKRD52Q8NB46 1076 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 UBA3Q8TBC4 463 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 FAM3CQ92520 227 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 KREMEN1Q96MU8 473 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 LRRC4Q9HBW1 653 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 DUS2Q9NX74 493 aaKnown RBP20.55■□□□□ 0.88
SS18-209ENST00000578595 APEX2Q9UBZ4 518 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 NAGPAQ9UK23 515 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 WNT6Q9Y6F9 365 aa20.55■□□□□ 0.88
SS18-209ENST00000578595 HHLA1C9JL84 531 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 LEFTY2O00292 366 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 SCAMP3O14828 347 aaKnown RBP20.54■□□□□ 0.88
SS18-209ENST00000578595 COCHO43405 550 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 OAS1P00973 400 aaKnown RBP20.54■□□□□ 0.88
SS18-209ENST00000578595 EEF1GP26641 437 aaKnown RBP20.54■□□□□ 0.88
SS18-209ENST00000578595 APBA1Q02410 837 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 PDE4CQ08493 712 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 ITPRIPL2Q3MIP1 535 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 TCP11X2Q5H9J9 407 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 TTC30AQ86WT1 665 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 ANKRD20A12PQ8NF67 263 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 RIN3Q8TB24 985 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 FAM81BQ96LP2 452 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 RNF38Q9H0F5 515 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 TRPV5Q9NQA5 729 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 CFAP97Q9P2B7 532 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 KIAA1257Q9ULG3 409 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 SCML2Q9UQR0 700 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 CACNA1IQ9P0X4 2223 aa20.54■□□□□ 0.88
SS18-209ENST00000578595 A0A1W2PQH9 124 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 GTPBP10A4D1E9 387 aaKnown RBP20.53■□□□□ 0.88
SS18-209ENST00000578595 ARNTLO00327 626 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 O00370 1275 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 NCAM2O15394 837 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 TLR5O60602 858 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 ARSAP15289 507 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 TARSP26639 723 aaKnown RBP20.53■□□□□ 0.88
SS18-209ENST00000578595 PON1P27169 355 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 KIF11P52732 1056 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 MYL5Q02045 173 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 PDGFRLQ15198 375 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 ENOSF1Q7L5Y1 443 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 SIX6OS1Q8N1H7 587 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 CPA6Q8N4T0 437 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 TFAP2BQ92481 460 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 PRRX2Q99811 253 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 C8orf33Q9H7E9 229 aaPredicted RBP20.53■□□□□ 0.88
SS18-209ENST00000578595 IL37Q9NZH6 218 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 SH3BP1Q9Y3L3 701 aa20.53■□□□□ 0.88
SS18-209ENST00000578595 MTF2Q9Y483 593 aaPredicted RBP20.53■□□□□ 0.88
SS18-209ENST00000578595 CACNA1HO95180 2353 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 FAM92AA1XBS5 289 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 SPECC1L-ADORA2AF8WAN1 911 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 RNF225M0QZC1 329 aaPredicted RBP20.52■□□□□ 0.88
SS18-209ENST00000578595 XPO1O14980 1071 aaKnown RBP20.52■□□□□ 0.88
SS18-209ENST00000578595 LETM1O95202 739 aaPredicted RBP20.52■□□□□ 0.88
SS18-209ENST00000578595 SETSIPP0DME0 302 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 TKTL1P51854 596 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 SLC7A9P82251 487 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 ADIGQ0VDE8 80 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 RUNX3Q13761 415 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 STILQ15468 1287 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 MIIPQ5JXC2 388 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 DDX42Q86XP3 938 aaKnown RBP eCLIP20.52■□□□□ 0.88
SS18-209ENST00000578595 CCDC105Q8IYK2 499 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 AOPEPQ8N6M6 819 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 DTWD2Q8NBA8 298 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 OSCP1Q8WVF1 389 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 NELL2Q99435 816 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 DDX23Q9BUQ8 820 aaKnown RBP20.52■□□□□ 0.88
SS18-209ENST00000578595 NAT10Q9H0A0 1025 aaKnown RBP20.52■□□□□ 0.88
SS18-209ENST00000578595 VPS16Q9H269 839 aa20.52■□□□□ 0.88
SS18-209ENST00000578595 FANCLQ9NW38 375 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms