RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CAPN9O14815 690 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 PPP1R12AO14974 1030 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 TRIM66O15016 1216 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 MEFVO15553 781 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 TCEA3O75764 348 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 B3GAT3O94766 335 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ENDOD1O94919 500 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 TRUB2O95900 331 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 TFRCP02786 760 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 GSTA2P09210 222 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 GHRP10912 638 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 SLC2A3P11169 496 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CKBP12277 381 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 MX2P20592 715 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 DNAJB2P25686 324 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CTGFP29279 349 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CCND3P30281 292 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 MIPP30301 263 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 HSD17B3P37058 310 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 GGCXP38435 758 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 MARCKSL1P49006 195 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 PSEN1P49768 467 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 PLTPP55058 493 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 YWHAZP63104 245 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 MRPS5P82675 430 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 CBX1P83916 185 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ROR1Q01973 937 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 YWHAHQ04917 246 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 DHX9Q08211 1270 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 ILF2Q12905 390 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 LPIN1Q14693 890 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 STAT4Q14765 748 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 SIX1Q15475 284 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 TERF2Q15554 542 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 TRIM71Q2Q1W2 868 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 P3H1Q32P28 736 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 EFHC2Q5JST6 749 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 GLRA4Q5JXX5 417 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ERMARDQ5T6L9 678 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CYP4A22Q5TCH4 519 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 C1orf53Q5VUE5 145 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 FAM183BPQ6ZVS7 135 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 LRRC8DQ7L1W4 858 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 TADA2BQ86TJ2 420 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 TTC30AQ86WT1 665 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 SPATS2Q86XZ4 545 aaKnown RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 LRRC49Q8IUZ0 686 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CD99L2Q8TCZ2 262 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 SLC2A14Q8TDB8 520 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 UBLCP1Q8WVY7 318 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 RXFP2Q8WXD0 754 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 FAF2Q96CS3 445 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 BTBD6Q96KE9 485 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ATP6V1G3Q96LB4 118 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 TOX2Q96NM4 488 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 SERPINB12Q96P63 405 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 TWNKQ96RR1 684 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 GAD1Q99259 594 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ADAM2Q99965 735 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 KLC2Q9H0B6 622 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 EPC1Q9H2F5 836 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 FBXO44Q9H4M3 255 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CSNK1G1Q9HCP0 422 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ZDHHC18Q9NUE0 388 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS39-204ENST00000561818 SMARCAL1Q9NZC9 954 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 VPS18Q9P253 973 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 ANAPC5Q9UJX4 755 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 HES2Q9Y543 173 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 CLUHO75153 1309 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 SGK1O00141 431 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 DNALI1O14645 258 aaPredicted RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 CST8O60676 142 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 TRPA1O75762 1119 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ZMYND10O75800 440 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 AGTP01019 485 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 KRT14P02533 472 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 CTSHP09668 335 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 CD52P31358 61 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 HCAR3P49019 387 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 GUCY2FP51841 1108 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 KPNA1P52294 538 aaPredicted RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 CDH6P55285 790 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ARL4CP56559 192 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 BCAR1P56945 870 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 TAS2R40P59535 323 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 FAM189BP81408 668 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ZNF200P98182 395 aaPredicted RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 RNASELQ05823 741 aaKnown RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 ZNF252P-AS1Q0IIN9 211 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 SCAPQ12770 1279 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 NOMO1Q15155 1222 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 OASLQ15646 514 aaKnown RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 NOMO2Q5JPE7 1267 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 BRMS1LQ5PSV4 323 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 OVOS1Q6IE37 1185 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 MFSD5Q6N075 450 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 PMF1Q6P1K2 205 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 MFSD7Q6UXD7 560 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 AGMOQ6ZNB7 445 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms