RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 TMX1Q9H3N1 280 aa4.36□□□□□ -1.71
LRRC28-218ENST00000560236 ZDHHC8Q9ULC8 765 aa4.36□□□□□ -1.71
LRRC28-218ENST00000560236 PCDHA3Q9Y5H8 950 aa4.36□□□□□ -1.71
LRRC28-218ENST00000560236 QSER1Q2KHR3 1735 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 SHTN1A0MZ66 631 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 NPSP0C0P6 89 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 CBSLP0DN79 551 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 TKTP29401 623 aaKnown RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 CBSP35520 551 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 PDE1AP54750 535 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 KRT85P78386 507 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 GTF2H3Q13889 308 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 BOP1Q14137 746 aaKnown RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 DAZAP2Q15038 168 aaPredicted RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 PCBP2Q15366 365 aaKnown RBP eCLIP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 TRIP6Q15654 476 aaKnown RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 KLHL22Q53GT1 634 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 FAM160B1Q5W0V3 765 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 MIS18BP1Q6P0N0 1132 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 LAYNQ6UX15 382 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 TRIM72Q6ZMU5 477 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 PNMA8AQ86V59 439 aaPredicted RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 KRT73Q86Y46 540 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 CPA6Q8N4T0 437 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 C8orf58Q8NAV2 365 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 FAM46DQ8NEK8 389 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 PRSS3P2Q8NHM4 247 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 MACROD1Q9BQ69 325 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 TMEM79Q9BSE2 394 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 WDCPQ9H6R7 721 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 PDGFCQ9NRA1 345 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 SERTAD3Q9UJW9 196 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 TRHDEQ9UKU6 1024 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 ADAMTS5Q9UNA0 930 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 KIF15Q9NS87 1388 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 HFM1A2PYH4 1435 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 CCDC144AA2RUR9 1427 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 MYOM3Q5VTT5 1437 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 PRAG1Q86YV5 1406 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 RRBP1Q9P2E9 1410 aaKnown RBP4.35□□□□□ -1.71
LRRC28-218ENST00000560236 KIF1BO60333 1816 aa4.35□□□□□ -1.71
LRRC28-218ENST00000560236 FZD9O00144 591 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 INSIG1O15503 277 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 FESP07332 822 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 SNHG28P0DPA3 235 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 ZNF134P52741 427 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 THEMIS2Q5TEJ8 643 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 RUSC1-AS1Q66K80 236 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 PARS2Q7L3T8 475 aaKnown RBP4.34□□□□□ -1.71
LRRC28-218ENST00000560236 DNAJC5GQ8N7S2 189 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 SLC46A1Q96NT5 459 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 PUS7Q96PZ0 661 aaKnown RBP4.34□□□□□ -1.71
LRRC28-218ENST00000560236 FSD1LQ9BXM9 530 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 TTYH3Q9C0H2 523 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 ABCF2Q9UG63 623 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 SPATA31A5Q5VU36 1347 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 SPATA31A7Q8IWB4 1347 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 WDR17Q8IZU2 1322 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 E9PCH4 1651 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 ARHGEF28Q8N1W1 1705 aaKnown RBP4.34□□□□□ -1.71
LRRC28-218ENST00000560236 FMN2Q9NZ56 1722 aa4.34□□□□□ -1.71
LRRC28-218ENST00000560236 PARP4Q9UKK3 1724 aaKnown RBP4.34□□□□□ -1.71
LRRC28-218ENST00000560236 ATP10DQ9P241 1426 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 MYMKA6NI61 221 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 H3BNC9 293 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 PIM1P11309 404 aaPredicted RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 CCKBRP32239 447 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 PXNP49023 591 aaPredicted RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 SP2Q02086 613 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 NOGQ13253 232 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 HEATR3Q7Z4Q2 680 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 NANOGP1Q8N7R0 232 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 RP9Q8TA86 221 aaKnown RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 DAZAP1Q96EP5 407 aaKnown RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 MRPL46Q9H2W6 279 aaKnown RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 GLOD4Q9HC38 313 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 HESX1Q9UBX0 185 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 FEZ2Q9UHY8 353 aaPredicted RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 CCNL1Q9UK58 526 aaPredicted RBP4.33□□□□□ -1.72
LRRC28-218ENST00000560236 ATP8A1Q9Y2Q0 1164 aa4.33□□□□□ -1.72
LRRC28-218ENST00000560236 AKAP12Q02952 1782 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 TNS3Q68CZ2 1445 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 ARHGEF10O15013 1369 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 METP08581 1390 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 CNTNAP2Q9UHC6 1331 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 SLC16A6O15403 523 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 BCAR3O75815 825 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 ATXN1LP0C7T5 689 aaKnown RBP4.32□□□□□ -1.72
LRRC28-218ENST00000560236 PPIFP30405 207 aaKnown RBP4.32□□□□□ -1.72
LRRC28-218ENST00000560236 LOXL3P58215 753 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 KRTAP10-7P60409 375 aaPredicted RBP4.32□□□□□ -1.72
LRRC28-218ENST00000560236 ITKQ08881 620 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 RAPGEF1Q13905 1077 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 LRRC41Q15345 812 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 LONRF3Q496Y0 759 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 Q4G0T1 1027 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 ARHGAP40Q5TG30 622 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 KRT28Q7Z3Y7 464 aa4.32□□□□□ -1.72
LRRC28-218ENST00000560236 SAMD14Q8IZD0 417 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms