RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 FNBP1Q96RU3 617 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 P2RY13Q9BPV8 354 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 STRA6Q9BX79 667 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 NUSAP1Q9BXS6 441 aaKnown RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 FGFBP2Q9BYJ0 223 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 TASP1Q9H6P5 420 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 IL21Q9HBE4 155 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 THG1LQ9NWX6 298 aaKnown RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 UBQLN1Q9UMX0 589 aaKnown RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 R3HCC1Q9Y3T6 440 aaKnown RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 TIMM13Q9Y5L4 95 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 STYXL1Q9Y6J8 313 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 GOLGA8IPA6NC78 632 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 GOLGA8JA6NMD2 632 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 KCNJ18B7U540 433 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 PPP1R37O75864 691 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 TPM2P07951 284 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 CYP3A5P20815 502 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 GJA4P35212 333 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 COPB1P53618 953 aaKnown RBP13.35□□□□□ -0.27
SHMT2-230ENST00000557427 EHHADHQ08426 723 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 KCNJ12Q14500 433 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 KRT31Q15323 416 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 FBXO43Q4G163 708 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 CENPPQ6IPU0 288 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 DSTYKQ6XUX3 929 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 ARMCX6Q7L4S7 300 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 C11orf74Q86VG3 221 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 CD302Q8IX05 232 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 TMEFF1Q8IYR6 380 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 CCAR2Q8N163 923 aaKnown RBP13.35□□□□□ -0.27
SHMT2-230ENST00000557427 MDGA1Q8NFP4 955 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 TSTD1Q8NFU3 115 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 OR2I1PQ8NGU4 316 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 OLIG1Q8TAK6 271 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 RLN3Q8WXF3 142 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 HVCN1Q96D96 273 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 SAAL1Q96ER3 474 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 FAM213AQ9BRX8 229 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 PCIF1Q9H4Z3 704 aa13.35□□□□□ -0.27
SHMT2-230ENST00000557427 ATXN2Q99700 1313 aaKnown RBP13.35□□□□□ -0.27
SHMT2-230ENST00000557427 FRMD3A2A2Y4 597 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 TNFRSF10BO14763 440 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 PPEF2O14830 753 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 CCP110O43303 1012 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 XPOTO43592 962 aaKnown RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 OAZ2O95190 189 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 ADRB2P07550 413 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 NFICP08651 508 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 HNRNPLP14866 589 aaKnown RBP eCLIP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 RDXP35241 583 aaKnown RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 STK4Q13043 487 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 PLD1Q13393 1074 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 TMEM132DQ14C87 1099 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 ANO7Q6IWH7 933 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 CRELD2Q6UXH1 353 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 IRF2BP1Q8IU81 584 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 SYT12Q8IV01 421 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 FAM114A1Q8IWE2 563 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 GUF1Q8N442 669 aaKnown RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 ATAD1Q8NBU5 361 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 APPL2Q8NEU8 664 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 USP13Q92995 863 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 CNOT6LQ96LI5 555 aaKnown RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 DUSP9Q99956 384 aaKnown RBP13.34□□□□□ -0.27
SHMT2-230ENST00000557427 OLFML3Q9NRN5 406 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 PCDHB8Q9UN66 801 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 MAPK8IP1Q9UQF2 711 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 CFAP46Q8IYW2 2715 aa13.34□□□□□ -0.27
SHMT2-230ENST00000557427 PCDH15Q96QU1 1955 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TRIM49BA6NDI0 452 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 KIF2AO00139 706 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TEX33O43247 280 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 LRPAP1P30533 357 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 ALDH1A3P47895 512 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 PMS1P54277 932 aaKnown RBP13.33□□□□□ -0.28
SHMT2-230ENST00000557427 GPR17Q13304 367 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TRIM14Q14142 442 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 ARHGAP15Q53QZ3 475 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 PEAR1Q5VY43 1037 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TMEM150AQ86TG1 271 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TMEM139Q8IV31 216 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 CMTM8Q8IZV2 173 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TC2NQ8N9U0 490 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 KIAA0895Q8NCT3 520 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 ACDQ96AP0 544 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TSPAN18Q96SJ8 248 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 LPIN3Q9BQK8 851 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 CBWD1Q9BRT8 395 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 GTPBP2Q9BX10 602 aaKnown RBP13.33□□□□□ -0.28
SHMT2-230ENST00000557427 TMEM206Q9H813 350 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 DPP3Q9NY33 737 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 MAGEC2Q9UBF1 373 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-230ENST00000557427 PILRBQ9UKJ0 227 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 ASB3Q9Y575 518 aa13.33□□□□□ -0.28
SHMT2-230ENST00000557427 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.33□□□□□ -0.28
SHMT2-230ENST00000557427 SHROOM3Q8TF72 1996 aa13.32□□□□□ -0.28
SHMT2-230ENST00000557427 ZNF462Q96JM2 2506 aa13.32□□□□□ -0.28
SHMT2-230ENST00000557427 MTMR11A4FU01 709 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms