RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LHX6	Q9UPM6	363 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	NUP205	Q92621	2012 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	ATXN2	Q99700	1313 aa	Known RBP	13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	FAM208B	Q5VWN6	2430 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	E2F8	A0AVK6	867 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZBTB24	O43167	697 aa	Predicted RBP	13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	OPHN1	O60890	802 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	SERPINF2	P08697	491 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	FAM163B	P0C2L3	166 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	RPL6	Q02878	288 aa	Known RBP	13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	KDSR	Q06136	332 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	MDH1B	Q5I0G3	518 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	LY6G5C	Q5SRR4	150 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	BTBD8	Q5XKL5	378 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	TRMT11	Q7Z4G4	463 aa	Known RBP	13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	RABEPK	Q7Z6M1	372 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	DEFB119	Q8N690	84 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	NAT16	Q8N8M0	369 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	OR6B3	Q8NGW1	331 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	OTUB2	Q96DC9	234 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZDHHC4	Q9NPG8	344 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	FSCN3	Q9NQT6	498 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	PANK4	Q9NVE7	773 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	OBSL1	O75147	1896 aa		13.48	□□□□□ -0.25
SHMT2-223	ENST00000556689	DMXL2	Q8TDJ6	3036 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	FAM221B	A6H8Z2	402 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	PRPF6	O94906	941 aa	Known RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	CST3	P01034	146 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	PTPN1	P18031	435 aa	Known RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	YWHAQ	P27348	245 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	TXLNA	P40222	546 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZNF33A	Q06730	810 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	HNRNPD	Q14103	355 aa	Known RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	NUP93	Q8N1F7	819 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	PHTF2	Q8N3S3	785 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	CHCHD4	Q8N4Q1	142 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	MRPL45	Q9BRJ2	306 aa	Known RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	CAPN10	Q9HC96	672 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	DEC1	Q9P2X7	70 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	SRPRB	Q9Y5M8	271 aa	Known RBP	13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	CLIC4	Q9Y696	253 aa		13.47	□□□□□ -0.25
SHMT2-223	ENST00000556689	PTPRJ	Q12913	1337 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	FRMD3	A2A2Y4	597 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	TACC1	O75410	805 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	SYP	P08247	313 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	NTSR1	P30989	418 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	CACNA2D1	P54289	1103 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	IFRD2	Q12894	506 aa	Predicted RBP	13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZNF423	Q2M1K9	1284 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	CCDC73	Q6ZRK6	1079 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	TRAPPC11	Q7Z392	1133 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	CBWD2	Q8IUF1	395 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	WDR49	Q8IV35	697 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	ETFBKMT	Q8IXQ9	262 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	MINDY1	Q8N5J2	469 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	PDZD8	Q8NEN9	1154 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	FGFBP2	Q9BYJ0	223 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	PANK2	Q9BZ23	570 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	ELOVL4	Q9GZR5	314 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	KIAA1586	Q9HCI6	787 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	SPHK2	Q9NRA0	654 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	CHORDC1	Q9UHD1	332 aa	Predicted RBP	13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	FBXO2	Q9UK22	296 aa	Predicted RBP	13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	SH3BP1	Q9Y3L3	701 aa		13.46	□□□□□ -0.25
SHMT2-223	ENST00000556689	ANAPC1	Q9H1A4	1944 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	CLDN5	O00501	218 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	ARHGAP33	O14559	1287 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	HOXC11	O43248	304 aa	Predicted RBP	13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	COCH	O43405	550 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	ZNF217	O75362	1048 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	TULP3	O75386	442 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	RTN3	O95197	1032 aa	Predicted RBP	13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	CD59	P13987	128 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	GABRG2	P18507	467 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	TNNC1	P63316	161 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	FAM193A	P78312	1265 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	ANO4	Q32M45	955 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	WDR72	Q3MJ13	1102 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	HECTD3	Q5T447	861 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	SDE2	Q6IQ49	451 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	STXBP4	Q6ZWJ1	553 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	CCDC65	Q8IXS2	484 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	OVCA2	Q8WZ82	227 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	FBXO32	Q969P5	355 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	CLIC6	Q96NY7	704 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	B3GNT5	Q9BYG0	378 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	ZNF518B	Q9C0D4	1074 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	TMEM30A	Q9NV96	361 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	HSPBP1	Q9NZL4	362 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	CALCOCO1	Q9P1Z2	691 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	STARD13	Q9Y3M8	1113 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	NME7	Q9Y5B8	376 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	ATRX	P46100	2492 aa		13.45	□□□□□ -0.26
SHMT2-223	ENST00000556689	MYO16	Q9Y6X6	1858 aa		13.44	□□□□□ -0.26
SHMT2-223	ENST00000556689	ASCC3	Q8N3C0	2202 aa	Known RBP	13.44	□□□□□ -0.26
SHMT2-223	ENST00000556689		A0A1W2PQD8	194 aa		13.44	□□□□□ -0.26
SHMT2-223	ENST00000556689	PCNX2	A6NKB5	2137 aa		13.44	□□□□□ -0.26
SHMT2-223	ENST00000556689		A8MXQ7	604 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms