RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	SCAMP5	Q8TAC9	235 aa		13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	EIF3C	Q99613	913 aa	Known RBP	13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	CORO1B	Q9BR76	489 aa		13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	TTLL2	Q9BWV7	592 aa		13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	ULBP1	Q9BZM6	244 aa		13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	TLR8	Q9NR97	1041 aa	Known RBP	13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	WDR35	Q9P2L0	1181 aa		13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	PLXNA3	P51805	1871 aa		13.16	□□□□□ -0.3
ABCD4-223	ENST00000555904	ERBB2	P04626	1255 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	H2AFZ	P0C0S5	128 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	USP17L7	P0C7H9	530 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	MYL4	P12829	197 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	DES	P17661	470 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	ABCB4	P21439	1286 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	CDC25C	P30307	473 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	GABRB2	P47870	512 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	RPL34	P49207	117 aa	Known RBP	13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	PSEN1	P49768	467 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	TAF10	Q12962	218 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	MTMR3	Q13615	1198 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	CTC1	Q2NKJ3	1217 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	OR6B2	Q6IFH4	312 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	H2AFV	Q71UI9	128 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	KIAA1328	Q86T90	577 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	MON1A	Q86VX9	555 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	TMEM139	Q8IV31	216 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	MCOLN2	Q8IZK6	566 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	PPM1E	Q8WY54	764 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	OVCA2	Q8WZ82	227 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	IRGQ	Q8WZA9	623 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	FAM149B1	Q96BN6	582 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	ZNF653	Q96CK0	615 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	MYRFL	Q96LU7	910 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	RIPOR3	Q96MK2	946 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	ISCU	Q9H1K1	167 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	TAS2R14	Q9NYV8	317 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	TRPM5	Q9NZQ8	1165 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	SCML2	Q9UQR0	700 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	USP3	Q9Y6I4	520 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	SCIN	Q9Y6U3	715 aa		13.15	□□□□□ -0.3
ABCD4-223	ENST00000555904	CDH23	Q9H251	3354 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ATG2A	Q2TAZ0	1938 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	GOLGA8S	H3BPF8	625 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZNF197	O14709	1029 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	TBX10	O75333	385 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	LCA5L	O95447	670 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ABL1	P00519	1130 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	HMGA1	P17096	107 aa	Known RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	USP46	P62068	366 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	MRPS5	P82675	430 aa	Known RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZNF268	Q14587	947 aa	Predicted RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	MTF1	Q14872	753 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	COL19A1	Q14993	1142 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ARHGAP15	Q53QZ3	475 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	EFHC1	Q5JVL4	640 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ATAT1	Q5SQI0	421 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	PM20D1	Q6GTS8	502 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	DNAJC24	Q6P3W2	148 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	RAD9B	Q6WBX8	426 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	FAM183BP	Q6ZVS7	135 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	TADA2B	Q86TJ2	420 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	XYLT1	Q86Y38	959 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	SCML4	Q8N228	414 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	C12orf76	Q8N812	135 aa	Predicted RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	OLIG1	Q8TAK6	271 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	MRPS31	Q92665	395 aa	Known RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	TRIM44	Q96DX7	344 aa	Predicted RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	CDK5RAP1	Q96SZ6	601 aa	Known RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	SELENOO	Q9BVL4	669 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	APOL5	Q9BWW9	433 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	NACA2	Q9H009	215 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	ADAM7	Q9H2U9	754 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	MRPL47	Q9HD33	250 aa	Known RBP	13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	PARVA	Q9NVD7	372 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	IL37	Q9NZH6	218 aa		13.14	□□□□□ -0.31
ABCD4-223	ENST00000555904	NCAN	O14594	1321 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	FAM92A	A1XBS5	289 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CAPN9	O14815	690 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	PAPSS1	O43252	624 aa	Predicted RBP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	HSF2BP	O75031	334 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	RHO	P08100	348 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	GLI1	P08151	1106 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CCDC175	P0C221	793 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	RALA	P11233	206 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	GABRR2	P28476	465 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	SCNN1A	P37088	669 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	MAGEA1	P43355	309 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	DAOA	P59103	153 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	YWHAG	P61981	247 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	GPC5	P78333	572 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CCZ1B	P86790	482 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CCZ1	P86791	482 aa	Predicted RBP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	SLC6A3	Q01959	620 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	C2CD6	Q53TS8	623 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	BTBD8	Q5XKL5	378 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	DCUN1D2	Q6PH85	259 aa		13.13	□□□□□ -0.31

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