RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	UVRAG	Q9P2Y5	699 aa		10.03	□□□□□ -0.8
YBX3-215	ENST00000544504	HSFX1	Q9UBD0	423 aa		10.03	□□□□□ -0.8
YBX3-215	ENST00000544504	REXO2	Q9Y3B8	237 aa	Known RBP	10.03	□□□□□ -0.8
YBX3-215	ENST00000544504	NR2E1	Q9Y466	385 aa		10.03	□□□□□ -0.8
YBX3-215	ENST00000544504	NME7	Q9Y5B8	376 aa		10.03	□□□□□ -0.8
YBX3-215	ENST00000544504	ATG2A	Q2TAZ0	1938 aa		10.03	□□□□□ -0.8
YBX3-215	ENST00000544504	MYBPHL	A2RUH7	354 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	TRIM66	O15016	1216 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	ZNF500	O60304	480 aa	Predicted RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	TBC1D4	O60343	1298 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	ATP2C2	O75185	946 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	AP1G2	O75843	785 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	C1R	P00736	705 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	CYP1A2	P05177	515 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	CTSA	P10619	480 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	ABCB4	P21439	1286 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	SCNN1A	P37088	669 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PLA2G4A	P47712	749 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	GABRB2	P47870	512 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	HADHB	P55084	474 aa	Known RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	GSC	P56915	257 aa	Predicted RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	RPL10A	P62906	217 aa	Known RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PDE4C	Q08493	712 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PDCL	Q13371	301 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	ZNF268	Q14587	947 aa	Predicted RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	SLC39A12	Q504Y0	691 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	KIAA0319	Q5VV43	1072 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	MON1B	Q7L1V2	547 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	TTC30A	Q86WT1	665 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PALB2	Q86YC2	1186 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	SYCE1	Q8N0S2	351 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	VPS52	Q8N1B4	723 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	TRIM58	Q8NG06	486 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	UBA3	Q8TBC4	463 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	MICAL1	Q8TDZ2	1067 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	SLC35F5	Q8WV83	523 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	KCTD13	Q8WZ19	329 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	SECISBP2L	Q93073	1101 aa	Known RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	ALS2CR12	Q96Q35	445 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PKMYT1	Q99640	499 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	TRIM62	Q9BVG3	475 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	B3GNT5	Q9BYG0	378 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	MFSD1	Q9H3U5	465 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	CSNK1G1	Q9HCP0	422 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	NGRN	Q9NPE2	291 aa	Known RBP	10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	LZTFL1	Q9NQ48	299 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	ST7	Q9NRC1	585 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	KRT82	Q9NSB4	513 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PARVA	Q9NVD7	372 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	TAS2R14	Q9NYV8	317 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	EHD2	Q9NZN4	543 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	PCDHGC5	Q9Y5F6	944 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	NCAN	O14594	1321 aa		10.02	□□□□□ -0.81
YBX3-215	ENST00000544504	NCOR2	Q9Y618	2525 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	PER2	O15055	1255 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	MTA2	O94776	668 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	FBXO21	O94952	628 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	CALCA	P01258	141 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	NOP2	P46087	812 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	RPL34	P49207	117 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	TUFM	P49411	452 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	NAP1L1	P55209	391 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	RAB33A	Q14088	237 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	PUM1	Q14671	1186 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	SMC1A	Q14683	1233 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	PTPN14	Q15678	1187 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	DUSP6	Q16828	381 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	DNAJC24	Q6P3W2	148 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	TMEM184A	Q6ZMB5	413 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	MMS22L	Q6ZRQ5	1243 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	CLEC20A	Q6ZU45	233 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	TMC7	Q7Z402	723 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	TMEM110	Q86TL2	294 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	WDTC1	Q8N5D0	677 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	C3orf20	Q8ND61	904 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	VN1R2	Q8NFZ6	395 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	C8orf48	Q96LL4	319 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	C11orf70	Q9BRQ4	267 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	EMILIN2	Q9BXX0	1053 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	SLC4A5	Q9BY07	1137 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	THAP2	Q9H0W7	228 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	ZBP1	Q9H171	429 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	S1PR5	Q9H228	398 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	SEMA4A	Q9H3S1	761 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	LRRC4	Q9HBW1	653 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	RXFP1	Q9HBX9	757 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	CTTNBP2NL	Q9P2B4	639 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	CNOT8	Q9UFF9	292 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	AFF4	Q9UHB7	1163 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	GUCA1B	Q9UMX6	200 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	IRAK3	Q9Y616	596 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	CACNA1B	Q00975	2339 aa		10.01	□□□□□ -0.81
YBX3-215	ENST00000544504	KIAA1671	Q9BY89	1806 aa		10	□□□□□ -0.81
YBX3-215	ENST00000544504	CLDN5	O00501	218 aa		10	□□□□□ -0.81
YBX3-215	ENST00000544504	HCRT	O43612	131 aa		10	□□□□□ -0.81
YBX3-215	ENST00000544504	ADH1A	P07327	375 aa		10	□□□□□ -0.81
YBX3-215	ENST00000544504	GLI1	P08151	1106 aa		10	□□□□□ -0.81
YBX3-215	ENST00000544504	CFH	P08603	1231 aa		10	□□□□□ -0.81
YBX3-215	ENST00000544504	HOXB8	P17481	243 aa	Predicted RBP	10	□□□□□ -0.81
YBX3-215	ENST00000544504	BDNF	P23560	247 aa		10	□□□□□ -0.81

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