RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 SYT12Q8IV01 421 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 TMEFF1Q8IYR6 380 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 NUP93Q8N1F7 819 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 RDH13Q8NBN7 331 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 OTUB2Q96DC9 234 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 CGRRF1Q99675 332 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 ADAM33Q9BZ11 813 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 TNMDQ9H2S6 317 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 SLC32A1Q9H598 525 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 ZMIZ1Q9ULJ6 1067 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 MORC2Q9Y6X9 1032 aaPredicted RBP16.41■□□□□ 0.22
RTN3-211ENST00000542238 ATP8B3O60423 1300 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 TCRBV21S2A2A0A5A6 115 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 TMEM8BA6NDV4 472 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 SYT1P21579 422 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 KIR2DL1P43626 348 aaPredicted RBP16.4■□□□□ 0.22
RTN3-211ENST00000542238 PSMD6Q15008 389 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 LY6G5CQ5SRR4 150 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 EMC10Q5UCC4 262 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 TRMT11Q7Z4G4 463 aaKnown RBP16.4■□□□□ 0.22
RTN3-211ENST00000542238 C12orf40Q86WS4 652 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 SFTPA1Q8IWL2 248 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 B3GALNT2Q8NCR0 500 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 GLIS3Q8NEA6 775 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 DEFB124Q8NES8 71 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 OVCA2Q8WZ82 227 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 HPS3Q969F9 1004 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 FBXO32Q969P5 355 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 CCDC127Q96BQ5 260 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 ZNF518BQ9C0D4 1074 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 SH3BP1Q9Y3L3 701 aa16.4■□□□□ 0.22
RTN3-211ENST00000542238 PCNX2A6NKB5 2137 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 MYH10P35580 1976 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 TBC1D3BA6NDS4 549 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 SPINK2P20155 84 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 PTGER3P43115 390 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 MAPK8P45983 427 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 CACNA2D1P54289 1103 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 ASIC1P78348 528 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 MESP2Q0VG99 397 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 HECTD3Q5T447 861 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 LYSMD4Q5XG99 296 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 KDF1Q8NAX2 398 aaPredicted RBP16.39■□□□□ 0.21
RTN3-211ENST00000542238 XXYLT1Q8NBI6 393 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 ZNF507Q8TCN5 953 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 KCNV2Q8TDN2 545 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 USP28Q96RU2 1077 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 SCNM1Q9BWG6 230 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 B3GNT5Q9BYG0 378 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 CUEDC2Q9H467 287 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 DPEP3Q9H4B8 488 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 AGPAT3Q9NRZ7 376 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 NXF1Q9UBU9 619 aaKnown RBP16.39■□□□□ 0.21
RTN3-211ENST00000542238 MBD1Q9UIS9 605 aaPredicted RBP16.39■□□□□ 0.21
RTN3-211ENST00000542238 WASF3Q9UPY6 502 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 NME7Q9Y5B8 376 aa16.39■□□□□ 0.21
RTN3-211ENST00000542238 CLDN5O00501 218 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 ZBTB24O43167 697 aaPredicted RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 AP5Z1O43299 807 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 COCHO43405 550 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 ADAM23O75077 832 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 PHACTR2O75167 634 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 CLSTN1O94985 981 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 STAU1O95793 577 aaKnown RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 ENGP17813 658 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 ATICP31939 592 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 HOXD12P35452 270 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 HOXD13P35453 343 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 CYP2J2P51589 502 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 ATXN3P54252 364 aaPredicted RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 SNRPFP62306 86 aaKnown RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 CYP24A1Q07973 514 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 STK38Q15208 465 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 MAP7D1Q3KQU3 841 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 SLC23A3Q6PIS1 610 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 FRMD1Q8N878 549 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 ZNF513Q8N8E2 541 aaPredicted RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 CEP76Q8TAP6 659 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 SYAP1Q96A49 352 aaPredicted RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 MED10Q9BTT4 135 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 TRIM9Q9C026 710 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 NACA2Q9H009 215 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 ZSCAN16Q9H4T2 348 aaPredicted RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 ZDHHC4Q9NPG8 344 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 TMEM74BQ9NUR3 256 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 TMEM30AQ9NV96 361 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 KBTBD4Q9NVX7 518 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 DEC1Q9P2X7 70 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 CHORDC1Q9UHD1 332 aaPredicted RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 RALYQ9UKM9 306 aaKnown RBP16.38■□□□□ 0.21
RTN3-211ENST00000542238 ADAMTS9Q9P2N4 1935 aa16.38■□□□□ 0.21
RTN3-211ENST00000542238 CLIC2O15247 247 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 CFIP05156 583 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 CHRM1P11229 460 aaPredicted RBP16.37■□□□□ 0.21
RTN3-211ENST00000542238 MYL6P60660 151 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 ANO4Q32M45 955 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 FAM26FQ5R3K3 315 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 SLC36A4Q6YBV0 504 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 EPM2AIP1Q7L775 607 aaPredicted RBP16.37■□□□□ 0.21
RTN3-211ENST00000542238 HDDC3Q8N4P3 179 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms