RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMEM121BQ9BXQ6 578 aaPredicted RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 SNX25Q9H3E2 840 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 CCSER2Q9H7U1 834 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 UPF2Q9HAU5 1272 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 TFIP11Q9UBB9 837 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 NXF1Q9UBU9 619 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 GON4LQ3T8J9 2241 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 ZFYVE26Q68DK2 2539 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 EIF3DO15371 548 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 MBL2P11226 248 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 P2RY2P41231 377 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 FOXC1Q12948 553 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 ORC1Q13415 861 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 STK38Q15208 465 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 SURF1Q15526 300 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 MAPRE1Q15691 268 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 MAP7D1Q3KQU3 841 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 MIB1Q86YT6 1006 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 TMEFF1Q8IYR6 380 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 B3GALNT2Q8NCR0 500 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 PIGKQ92643 395 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 EXOC4Q96A65 974 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 ERLEC1Q96DZ1 483 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 PNKPQ96T60 521 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 BLZF1Q9H2G9 400 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 CACNA1EQ15878 2313 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 CEP192Q8TEP8 1941 aa16.45■□□□□ 0.22
CLSTN3-213ENST00000541953 PCDH15Q96QU1 1955 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 TNFRSF10BO14763 440 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 ADH5P11766 374 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 PFKLP17858 780 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 PDE6CP51160 858 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 TNNC1P63316 161 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 MRPS21P82921 87 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 TDRD10Q5VZ19 366 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 SCARA5Q6ZMJ2 495 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 FAM35AQ86V20 835 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 BBS7Q8IWZ6 715 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 ETFBKMTQ8IXQ9 262 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 NAT16Q8N8M0 369 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 DEFB124Q8NES8 71 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 ZMIZ2Q8NF64 920 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 HMGB4Q8WW32 186 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 P2RY11Q96G91 374 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 CEP295NLQ96MC4 621 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 ELOVL4Q9GZR5 314 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 TMEM9BQ9NQ34 198 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 ARHGEF4Q9NR80 690 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 HMGXB4Q9UGU5 601 aa16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 CHORDC1Q9UHD1 332 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 CIZ1Q9ULV3 898 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 R3HCC1Q9Y3T6 440 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-213ENST00000541953 PI4KAP42356 2102 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 NBEAQ8NFP9 2946 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 A8MXQ7 604 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 KHNYNO15037 678 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 SPTLC2O15270 562 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 STX6O43752 255 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 BEST1O76090 585 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 PROS1P07225 676 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 YWHAQP27348 245 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 UAP1L1Q3KQV9 507 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 FOXD4L5Q5VV16 416 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 GRAMD1CQ8IYS0 662 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 DEFB119Q8N690 84 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 XXYLT1Q8NBI6 393 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 FOXD4L4Q8WXT5 416 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 FBXO32Q969P5 355 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 SLITRK1Q96PX8 696 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 SLC39A2Q9NP94 309 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 CD93Q9NPY3 652 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 GMIPQ9P107 970 aa16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 DSPP15924 2871 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-213ENST00000541953 A0A0A0MRY4 1105 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 TCRBV21S2A2A0A5A6 115 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 VNN1O95497 513 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 STAU1O95793 577 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 APODP05090 189 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 IRF1P10914 325 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 CCDC130P13994 396 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 WASP42768 502 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 SLC5A3P53794 718 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 CUL4BQ13620 913 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 TRIM61Q5EBN2 209 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 KIAA1211LQ6NV74 962 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 CNNM4Q6P4Q7 775 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 UNQ6494/PRO21346Q6UXR6 183 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 STXBP4Q6ZWJ1 553 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 TMEM25Q86YD3 366 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 FUKQ8N0W3 1084 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 NUP93Q8N1F7 819 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 C7orf25Q9BPX7 421 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 KIAA1586Q9HCI6 787 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 CELSR3Q9NYQ7 3312 aa16.42■□□□□ 0.22
CLSTN3-213ENST00000541953 LRRIQ3A6PVS8 624 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 GREM1O60565 184 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 TULP3O75386 442 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 ADH1CP00326 375 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms