RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	CCDC149	Q6ZUS6	474 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	MICU3	Q86XE3	530 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	KIAA0319L	Q8IZA0	1049 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	GALNT4	Q8N4A0	578 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488		Q8N9P0	234 aa	Predicted RBP	4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	JDP2	Q8WYK2	163 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	SNX18	Q96RF0	628 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	TMEM60	Q9H2L4	133 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	A1CF	Q9NQ94	594 aa	Known RBP	4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	ASIC5	Q9NY37	505 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	TPCN1	Q9ULQ1	816 aa		4.78	□□□□□ -1.64
PRKDC-210	ENST00000541488	LOC105371045	A0A1W2PR82	267 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	TCRBV5S1A1T	A0A578	114 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	UBE2Q2L	H0YL09	131 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488		H7C1Q1	480 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	ADAM10	O14672	748 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	ADAMTS3	O15072	1205 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	TJP3	O95049	919 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	KRTAP5-9	P26371	169 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	LMAN2	Q12907	356 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	ZNF268	Q14587	947 aa	Predicted RBP	4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	FAM102B	Q5T8I3	360 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	CXorf57	Q6NSI4	855 aa	Known RBP	4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	GALNT16	Q8N428	558 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	C11orf44	Q8N8P7	122 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	FAM156A	Q8NDB6	213 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	ZBTB9	Q96C00	473 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	CCDC17	Q96LX7	622 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	PRSS22	Q9GZN4	317 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	ELOVL5	Q9NYP7	299 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	DNMT3B	Q9UBC3	853 aa	Known RBP	4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	ITGB1BP2	Q9UKP3	347 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	EID1	Q9Y6B2	187 aa		4.77	□□□□□ -1.65
PRKDC-210	ENST00000541488	TRIM43B	A6NCK2	446 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	AGPS	O00116	658 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	PIAS2	O75928	621 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	TOP3B	O95985	862 aa	Known RBP	4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	NTSR1	P30989	418 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	UQCRC1	P31930	480 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	BCAT1	P54687	386 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	CNGA2	Q16280	664 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	RNF220	Q5VTB9	566 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	TRIM43	Q96BQ3	446 aa	Predicted RBP	4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	ZNF48	Q96MX3	618 aa	Predicted RBP	4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	FCRL4	Q96PJ5	515 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	VPS16	Q9H269	839 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	C1orf112	Q9NSG2	853 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	MID2	Q9UJV3	735 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	OGDHL	Q9ULD0	1010 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	L1RE1	Q9UN81	338 aa		4.76	□□□□□ -1.65
PRKDC-210	ENST00000541488	LOC102723971	A0A1B0GUV8	181 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	SPRY2	O43597	315 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	RRP9	O43818	475 aa	Known RBP	4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	USP1	O94782	785 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	BMP15	O95972	392 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	IGKV2-30	P06310	120 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	MYCL	P12524	364 aa	Predicted RBP	4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	CREB1	P16220	341 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	IL1R2	P27930	398 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	DIO1	P49895	249 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	FMO1	Q01740	532 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	KCNAB1	Q14722	419 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	DAZAP2	Q15038	168 aa	Predicted RBP	4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	NFE2	Q16621	373 aa	Predicted RBP	4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	INSC	Q1MX18	579 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	KIAA0753	Q2KHM9	967 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	TMEM65	Q6PI78	240 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	PTCHD4	Q6ZW05	846 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	MAGEB6	Q8N7X4	407 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	PRSS3P2	Q8NHM4	247 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	SUCLG2	Q96I99	432 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	VN1R3	Q9BXE9	311 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	FAM204A	Q9H8W3	233 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	AS3MT	Q9HBK9	375 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	COL20A1	Q9P218	1284 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	MGAT4C	Q9UBM8	478 aa		4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	AFF4	Q9UHB7	1163 aa	Known RBP	4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	SCAF8	Q9UPN6	1271 aa	Known RBP	4.75	□□□□□ -1.65
PRKDC-210	ENST00000541488	MBD3L4	A6NDZ8	208 aa	Predicted RBP	4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	MBD3L3	A6NE82	208 aa	Predicted RBP	4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	VSTM5	A8MXK1	200 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	TMEM232	C9JQI7	657 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	EXOC5	O00471	708 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	PPEF2	O14830	753 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	CD3EAP	O15446	510 aa	Known RBP	4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	CYP19A1	P11511	503 aa	Predicted RBP	4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	KLRC1	P26715	233 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	EPHA3	P29320	983 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	PTGER1	P34995	402 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	PGD	P52209	483 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	ARHGEF7	Q14155	803 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	SLC29A2	Q14542	456 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	GRM3	Q14832	879 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	KRTAP5-4	Q6L8H1	288 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	SESTD1	Q86VW0	696 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	MAFA	Q8NHW3	353 aa	Predicted RBP	4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	ADAMTS18	Q8TE60	1221 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	LRTOMT	Q8WZ04	291 aa		4.74	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms