RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TTLL9Q3SXZ7 439 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 TSPYL2Q9H2G4 693 aaPredicted RBP14.62□□□□□ -0.07
USP3-204ENST00000540797 UXTQ9UBK9 157 aaPredicted RBP14.62□□□□□ -0.07
USP3-204ENST00000540797 CARNS1A5YM72 827 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 MAFO75444 373 aaPredicted RBP14.62□□□□□ -0.07
USP3-204ENST00000540797 TAF11Q15544 211 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 SPDYE7PQ495Y7 208 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 LRIG3Q6UXM1 1119 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 SPOCD1Q6ZMY3 1216 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 SENP8Q96LD8 212 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 A0A087X0B3 334 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 FAM47DPA6NHR8 397 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 YWHAZP63104 245 aaKnown RBP14.62□□□□□ -0.07
USP3-204ENST00000540797 UGT3A1Q6NUS8 523 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 ZDHHC17Q8IUH5 632 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 KIAA0319LQ8IZA0 1049 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 TMEM86AQ8N2M4 240 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 MYO5BQ9ULV0 1848 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 PLA2G6O60733 806 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 PAEPP09466 180 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 RFC1P35251 1148 aaPredicted RBP14.62□□□□□ -0.07
USP3-204ENST00000540797 EVX2Q03828 476 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 FAM110CQ1W6H9 321 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 C1orf146Q5VVC0 180 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 HAS1Q92839 578 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 SLC35C1Q96A29 364 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 NDE1Q9NXR1 346 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 RPS6KL1Q9Y6S9 549 aa14.62□□□□□ -0.07
USP3-204ENST00000540797 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.62□□□□□ -0.07
USP3-204ENST00000540797 JCHAINP01591 159 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 AARS2Q5JTZ9 985 aaKnown RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 RBM43Q6ZSC3 357 aaKnown RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 NLRP14Q86W24 1093 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 ZNF558Q96NG5 402 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 CAMKK2Q96RR4 588 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 BTBD19C9JJ37 291 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 MCL1Q07820 350 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 ZNF268Q14587 947 aaPredicted RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 ILDR1Q86SU0 546 aaPredicted RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 OOSP2Q86WS3 158 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 ISCUQ9H1K1 167 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 RNF19AQ9NV58 838 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 PKD2L2Q9NZM6 624 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 MSRAQ9UJ68 235 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 TRMT6Q9UJA5 497 aaKnown RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 TNFSF13BQ9Y275 285 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 SLIT3O75094 1523 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 ZNF284Q2VY69 593 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 MCOLN2Q8IZK6 566 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 NT5MQ9NPB1 228 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 OSGEPQ9NPF4 335 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 IGFBP4P22692 258 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 ERMARDQ5T6L9 678 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 EXD1Q8NHP7 514 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 SERPINB11Q96P15 392 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 DEFB118Q96PH6 123 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 KLF6Q99612 283 aaPredicted RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 TEX12Q9BXU0 123 aa14.61□□□□□ -0.07
USP3-204ENST00000540797 MRPL46Q9H2W6 279 aaKnown RBP14.61□□□□□ -0.07
USP3-204ENST00000540797 TSPAN3O60637 253 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 SRP72O76094 671 aaKnown RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 BDNFP23560 247 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 ABCE1P61221 599 aaKnown RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 MTA1Q13330 715 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 MROH9Q5TGP6 573 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 PKN3Q6P5Z2 889 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 MMGT1Q8N4V1 131 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 PDGFCQ9NRA1 345 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 MRPL17Q9NRX2 175 aaKnown RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 DUSP10Q9Y6W6 482 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 TISP43B9A030 160 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 ANGPT2O15123 496 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 USP2O75604 605 aaPredicted RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 ESRRGP62508 458 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 TEDDM1Q5T9Z0 273 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 PRMT1Q99873 361 aaKnown RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 FTHL17Q9BXU8 183 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 GRID1Q9ULK0 1009 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 TCP11X1B4DZS4 312 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 MEFVO15553 781 aaPredicted RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 ATP9AO75110 1047 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 ACADMP11310 421 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 CYP2F1P24903 491 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 RETSATQ6NUM9 610 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 DACT3Q96B18 629 aaPredicted RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 MTBPQ96DY7 904 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 ITM2BQ9Y287 266 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 A0A0A6YYK5 440 aaPredicted RBP14.6□□□□□ -0.07
USP3-204ENST00000540797 TRIM66O15016 1216 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 MAPK7Q13164 816 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 UROC1Q96N76 676 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 ARHGAP20Q9P2F6 1191 aa14.6□□□□□ -0.07
USP3-204ENST00000540797 CCDC130P13994 396 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 INPP1P49441 399 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 SARSP49591 514 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 GEMIN4P57678 1058 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 STARD3Q14849 445 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 PCBP1Q15365 356 aaKnown RBP eCLIP14.59□□□□□ -0.07
USP3-204ENST00000540797 SCUBE3Q8IX30 993 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms