RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 KIAA1958Q8N8K9 716 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 ZMIZ2Q8NF64 920 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 TSTD1Q8NFU3 115 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 GOLGA5Q8TBA6 731 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 TCEAL3Q969E4 200 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 FBXO32Q969P5 355 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 WBP2Q969T9 261 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 CHAMP1Q96JM3 812 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 ZFRQ96KR1 1074 aaKnown RBP8.98□□□□□ -0.97
USP28-203ENST00000537490 PNKPQ96T60 521 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 MED10Q9BTT4 135 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 TPSD1Q9BZJ3 242 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 KCTD10Q9H3F6 313 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 IL37Q9NZH6 218 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 MMP17Q9ULZ9 603 aa8.98□□□□□ -0.97
USP28-203ENST00000537490 ZNF638Q14966 1978 aaKnown RBP8.98□□□□□ -0.97
USP28-203ENST00000537490 ANAPC1Q9H1A4 1944 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 DNAH14Q0VDD8 3507 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 A0A0A0MRY4 1105 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 A0A1B0GVL5 298 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 E2F8A0AVK6 867 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 BCLAF3A2AJT9 711 aaKnown RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 AP1G2O75843 785 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 RHOBTB1O94844 696 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CLSTN1O94985 981 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CAVIN2O95810 425 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 HSP90AA1P07900 732 aaKnown RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 ZDHHC11BP0C7U3 371 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CCDC130P13994 396 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 BCKDHBP21953 392 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 GBP1P32455 592 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 TIE1P35590 1138 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 PGFP49763 221 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 NDST1P52848 882 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 MRPS21P82921 87 aaKnown RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 CREB5Q02930 508 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 ORC1Q13415 861 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 ELF2Q15723 593 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CRY1Q16526 586 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 ZACNQ401N2 412 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 USP39Q53GS9 565 aaKnown RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 LY6G5CQ5SRR4 150 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 C1orf220Q5T0J3 134 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 HECTD3Q5T447 861 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 N4BP2L1Q5TBK1 243 aaPredicted RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 STPG1Q5TH74 334 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 SNX30Q5VWJ9 437 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 SPOPLQ6IQ16 392 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 ANO7Q6IWH7 933 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 SV2AQ7L0J3 742 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 RASSF3Q86WH2 238 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CRYBG2Q8N1P7 616 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 ALLCQ8N6M5 410 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 PDZD8Q8NEN9 1154 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 MDGA1Q8NFP4 955 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CCDC26Q8TAB7 109 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 TMEM174Q8WUU8 243 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 OVCA2Q8WZ82 227 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 TNIP3Q96KP6 325 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CNOT6LQ96LI5 555 aaKnown RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 SMOQ99835 787 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CCSER2Q9H7U1 834 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 DMAP1Q9NPF5 467 aaPredicted RBP8.97□□□□□ -0.97
USP28-203ENST00000537490 ZDHHC4Q9NPG8 344 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 VPS45Q9NRW7 570 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 EXOC1Q9NV70 894 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 GMIPQ9P107 970 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 HMGXB4Q9UGU5 601 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 CFAP45Q9UL16 551 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 GREB1Q4ZG55 1949 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 DMXL1Q9Y485 3027 aa8.97□□□□□ -0.97
USP28-203ENST00000537490 WDR87Q6ZQQ6 2873 aa8.96□□□□□ -0.97
USP28-203ENST00000537490 FAM92AA1XBS5 289 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 SGK1O00141 431 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 PDXKO00764 312 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 KAT7O95251 611 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 KLF8O95600 359 aaPredicted RBP8.96□□□□□ -0.98
USP28-203ENST00000537490 ADH1CP00326 375 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 NR3C1P04150 777 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 RPN1P04843 607 aaKnown RBP8.96□□□□□ -0.98
USP28-203ENST00000537490 APODP05090 189 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 ADH5P11766 374 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 PFKFB1P16118 471 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 CMA1P23946 247 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 EIF2DP41214 584 aaKnown RBP8.96□□□□□ -0.98
USP28-203ENST00000537490 GRIA2P42262 883 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 KIR2DL1P43626 348 aaPredicted RBP8.96□□□□□ -0.98
USP28-203ENST00000537490 MAP3K7CLP57077 242 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 KDSRQ06136 332 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 SGSM1Q2NKQ1 1148 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 CEP135Q66GS9 1140 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 PMS2CLQ68D20 193 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 TTC30AQ86WT1 665 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 DDX42Q86XP3 938 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP28-203ENST00000537490 BBS7Q8IWZ6 715 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 PHTF2Q8N3S3 785 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 NAT16Q8N8M0 369 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 C12orf29Q8N999 325 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 IL17RCQ8NAC3 791 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 TXNDC5Q8NBS9 432 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms