RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SCYL2Q6P3W7 929 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 C1orf228Q6PIY5 440 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 C12orf29Q8N999 325 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ANKLE1Q8NAG6 615 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ACAP3Q96P50 834 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 NT5C1AQ9BXI3 368 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 MYLK2Q9H1R3 596 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 SSU72Q9NP77 194 aaKnown RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 KCNH4Q9UQ05 1017 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 USH1CQ9Y6N9 552 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ENDOD1O94919 500 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ZNF286BP0CG31 522 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 EZRP15311 586 aaKnown RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 ELK3P41970 407 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 INCA1Q0VD86 236 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 PPIL2Q13356 520 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 MOGSQ13724 837 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 KYAT1Q16773 422 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 PREPLQ4J6C6 727 aaPredicted RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 FAM47CQ5HY64 1035 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 FAM182AQ5T1J6 154 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 LCLAT1Q6UWP7 414 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 CYP4V2Q6ZWL3 525 aaPredicted RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 DCAKDQ8WVC6 231 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 N4BP2L2Q92802 583 aaPredicted RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 OPTNQ96CV9 577 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 KLF6Q99612 283 aaPredicted RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 DHRS4Q9BTZ2 278 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 MIS12Q9H081 205 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ARHGEF3Q9NR81 526 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 WDR91A4D1P6 747 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 ADRA1DP25100 572 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 GOLGA7BQ2TAP0 167 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 ASRGL1Q7L266 308 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 FASTKD5Q7L8L6 764 aaKnown RBP13.72□□□□□ -0.21
LDLR-203ENST00000535915 VSIG1Q86XK7 387 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 ZNF75CPQ92670 426 aaPredicted RBP13.72□□□□□ -0.21
LDLR-203ENST00000535915 ERP27Q96DN0 273 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 KIF12Q96FN5 646 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 LRRC37BQ96QE4 947 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 CYTH2Q99418 400 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 UNC5CO95185 931 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 CCNB1P14635 433 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 ALDH3A1P30838 453 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 YARSP54577 528 aaKnown RBP13.72□□□□□ -0.21
LDLR-203ENST00000535915 WLSQ5T9L3 541 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 IGDCC3Q8IVU1 814 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 MAP7D3Q8IWC1 876 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 LINC01465Q8N7H1 131 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 TCP10LQ8TDR4 215 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 AFG1LQ8WV93 481 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 MIEF2Q96C03 454 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 FAF2Q96CS3 445 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 RNF157Q96PX1 679 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 NGRNQ9NPE2 291 aaKnown RBP13.72□□□□□ -0.21
LDLR-203ENST00000535915 KIAA1257Q9ULG3 409 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 C2CD2Q9Y426 696 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 HEY1Q9Y5J3 304 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 IKBKGQ9Y6K9 419 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 PLXNB2O15031 1838 aa13.72□□□□□ -0.21
LDLR-203ENST00000535915 PPP1R12AO14974 1030 aaPredicted RBP13.71□□□□□ -0.21
LDLR-203ENST00000535915 TSPAN1O60635 241 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 FGFR1P11362 822 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 SKIV2L2P42285 1042 aaKnown RBP13.71□□□□□ -0.21
LDLR-203ENST00000535915 YWHAGP61981 247 aaKnown RBP eCLIP13.71□□□□□ -0.21
LDLR-203ENST00000535915 ZC3H12AQ5D1E8 599 aaKnown RBP13.71□□□□□ -0.21
LDLR-203ENST00000535915 MZB1Q8WU39 189 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 ETNK1Q9HBU6 452 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 TXLNGQ9NUQ3 528 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 GPATCH2LQ9NWQ4 482 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 CHKBQ9Y259 395 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 KBTBD13C9JR72 458 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 KCNN4O15554 427 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 DCTN3O75935 186 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 PFKMP08237 780 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 TSHRP16473 764 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 CCDC14Q49A88 953 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 PPP1R26Q5T8A7 1209 aaPredicted RBP13.71□□□□□ -0.21
LDLR-203ENST00000535915 TAPT1Q6NXT6 567 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 MTHFD1LQ6UB35 978 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 OTOAQ7RTW8 1153 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 TTC39CQ8N584 583 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 CDCA5Q96FF9 252 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 C12orf65Q9H3J6 166 aaKnown RBP13.71□□□□□ -0.21
LDLR-203ENST00000535915 GBA2Q9HCG7 927 aaPredicted RBP13.71□□□□□ -0.21
LDLR-203ENST00000535915 RAB6BQ9NRW1 208 aa13.71□□□□□ -0.21
LDLR-203ENST00000535915 A0A1B0GUA9 196 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 TM9SF1O15321 606 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 AVILO75366 819 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 CYP2C8P10632 490 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 PTK7Q13308 1070 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 KCNJ11Q14654 390 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 PMF1Q6P1K2 205 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 BANPQ8N9N5 519 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 ALKBH8Q96BT7 664 aaKnown RBP13.71□□□□□ -0.22
LDLR-203ENST00000535915 SLC17A7Q9P2U7 560 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 TEX264Q9Y6I9 313 aa13.71□□□□□ -0.22
LDLR-203ENST00000535915 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms