RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 KRT15P19012 456 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 RGS19P49795 217 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 GEMIN4P57678 1058 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 CBLBQ13191 982 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ORC1Q13415 861 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 SPARCL1Q14515 664 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 PKN2Q16513 984 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 ZC3H12AQ5D1E8 599 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 EFHC2Q5JST6 749 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 MARCH8Q5T0T0 291 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 DPH6Q7L8W6 267 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ARCQ7LC44 396 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 PACS2Q86VP3 889 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 UBA3Q8TBC4 463 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 MGARPQ8TDB4 240 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 CPT1BQ92523 772 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ALKBH8Q96BT7 664 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 MS4A4AQ96JQ5 239 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 PWWP2AQ96N64 755 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TGS1Q96RS0 853 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 PPP1R16BQ96T49 567 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ELAC2Q9BQ52 826 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 ZNF670Q9BS34 389 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 SLC4A5Q9BY07 1137 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 OSBPL7Q9BZF2 842 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TRIM6Q9C030 488 aaPredicted RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 PRDM16Q9HAZ2 1276 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 CNTN3Q9P232 1028 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 PAK5Q9P286 719 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TJP2Q9UDY2 1190 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TBK1Q9UHD2 729 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 MDM4O15151 490 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 CHADO15335 359 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 CSDE1O75534 798 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 F2P00734 622 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 RPL22P35268 128 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 ACADSBP45954 432 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 SLC6A3Q01959 620 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 DPYSL3Q14195 570 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 NUGGCQ68CJ6 796 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 DARS2Q6PI48 645 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 OLFML1Q6UWY5 402 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 RGS9BPQ6ZS82 235 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TRPM8Q7Z2W7 1104 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TMEM110Q86TL2 294 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 PRUNE1Q86TP1 453 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ADAMTS10Q9H324 1103 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 TRABDQ9H4I3 376 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ACSS3Q9H6R3 686 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 SNX9Q9Y5X1 595 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.5□□□□□ -0.41
NUP54-202ENST00000502850 CFAP73A6NFT4 308 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 POC1B-GALNT4F8VUJ3 575 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 APOL1O14791 398 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 ZNF189O75820 626 aaPredicted RBP12.5□□□□□ -0.41
NUP54-202ENST00000502850 ZWINTO95229 277 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 PTPN9P43378 593 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 SCTRP47872 440 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 BCAT1P54687 386 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 LRRC14Q15048 493 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 ZBTB6Q15916 424 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 PKDCCQ504Y2 493 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 SPATA21Q7Z572 469 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 CDKL3Q8IVW4 592 aaPredicted RBP12.5□□□□□ -0.41
NUP54-202ENST00000502850 PALM2Q8IXS6 379 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 BRI3BPQ8WY22 251 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 RTP4Q96DX8 246 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 RNF157Q96PX1 679 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 XPO7Q9UIA9 1087 aaKnown RBP12.5□□□□□ -0.41
NUP54-202ENST00000502850 ZMYND8Q9ULU4 1186 aaPredicted RBP12.5□□□□□ -0.41
NUP54-202ENST00000502850 ARL2BPQ9Y2Y0 163 aa12.5□□□□□ -0.41
NUP54-202ENST00000502850 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.5□□□□□ -0.41
NUP54-202ENST00000502850 MBLAC1A4D2B0 266 aaPredicted RBP12.49□□□□□ -0.41
NUP54-202ENST00000502850 A6NJR5 290 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 PFKMP08237 780 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 CD48P09326 243 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 DARSP14868 501 aaKnown RBP12.49□□□□□ -0.41
NUP54-202ENST00000502850 BASP1P80723 227 aaKnown RBP12.49□□□□□ -0.41
NUP54-202ENST00000502850 MLLT1Q03111 559 aaPredicted RBP12.49□□□□□ -0.41
NUP54-202ENST00000502850 PPARDQ03181 441 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 BST2Q10589 180 aaKnown RBP12.49□□□□□ -0.41
NUP54-202ENST00000502850 MTFR1Q15390 333 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 KIZQ2M2Z5 673 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 SUGP1Q8IWZ8 645 aaKnown RBP12.49□□□□□ -0.41
NUP54-202ENST00000502850 CYP4X1Q8N118 509 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 FAM71DQ8N9W8 422 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 PEBP4Q96S96 227 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 PTPN18Q99952 460 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 KATNAL1Q9BW62 490 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 KLC2Q9H0B6 622 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 FGFR1OP2Q9NVK5 253 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 HAUS2Q9NVX0 235 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 SNTG2Q9NY99 539 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 TRIP11Q15643 1979 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 CLUHO75153 1309 aa12.49□□□□□ -0.41
NUP54-202ENST00000502850 BCLAF3A2AJT9 711 aaKnown RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 H7C0C1 242 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GPR32O75388 356 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FAM163BP0C2L3 166 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms