RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C1orf127Q8N9H9 656 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 INPP5DQ92835 1189 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PEBP4Q96S96 227 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 KLF6Q99612 283 aaPredicted RBP16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SMYD3Q9H7B4 428 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 C2CD2LO14523 706 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GAS2O43903 313 aaKnown RBP16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 DIAPH2O60879 1101 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRPA1O75762 1119 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 KRT19P08727 400 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GBP2P32456 591 aaPredicted RBP16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GABRB2P47870 512 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ATP11AP98196 1134 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZNF667Q5HYK9 610 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CYP4V2Q6ZWL3 525 aaPredicted RBP16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PALM2Q8IXS6 379 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CXorf38Q8TB03 319 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 HSPH1Q92598 858 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CDT1Q9H211 546 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 WDR91A4D1P6 747 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GOLGA8RI6L899 631 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MICAL2O94851 1124 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ENDOD1O94919 500 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PGK2P07205 417 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NFICP08651 508 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RBP3P10745 1247 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TSHRP16473 764 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 C1QTNF8P60827 252 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PTPN11Q06124 597 aaPredicted RBP16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MMRN1Q13201 1228 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RAB6CQ53S08 254 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SLC45A4Q5BKX6 768 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SPDYAQ5MJ70 313 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NPNTQ6UXI9 565 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NLRP9Q7RTR0 991 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PDIK1LQ8N165 341 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRAPPC12Q8WVT3 735 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZBTB10Q96DT7 871 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZNF570Q96NI8 536 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RAB6CQ9H0N0 254 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MINDY3Q9H8M7 445 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NPHS2Q9NP85 383 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 USP18Q9UMW8 372 aa16.79■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 EVPLQ92817 2033 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SMAPO00193 183 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TM9SF1O15321 606 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CBX6O95503 412 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 IQCF3P0C7M6 154 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 OSBPP22059 807 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CAP1Q01518 475 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RNASELQ05823 741 aaKnown RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SH3PXD2AQ5TCZ1 1133 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRNP1Q6NT89 227 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RFWD2Q8NHY2 731 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PTPRN2Q92932 1015 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SH3GL3Q99963 347 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TBC1D10AQ9BXI6 508 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 VPS11Q9H270 941 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ETAA1Q9NY74 926 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NKX1-2Q9UD57 310 aaPredicted RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CHMP2BQ9UQN3 213 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MCM3APO60318 1980 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MANSC4A6NHS7 340 aaPredicted RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 INO80B-WBP1J3KQ70 363 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GPR25O00155 361 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRAFD1O14545 582 aaPredicted RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CILPO75339 1184 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PAX7P23759 505 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ELK3P41970 407 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GPD2P43304 727 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 BASP1P80723 227 aaKnown RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MBTD1Q05BQ5 628 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NOMO1Q15155 1222 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CTC1Q2NKJ3 1217 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TAF1BQ53T94 588 aaPredicted RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FAM182AQ5T1J6 154 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SH2D5Q6ZV89 423 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SPATA18Q8TC71 538 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZNF398Q8TD17 642 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ALKBH8Q96BT7 664 aaKnown RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NLRP4Q96MN2 994 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 INO80BQ9C086 356 aaPredicted RBP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SPATC1LQ9H0A9 340 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SYNCQ9H7C4 482 aa16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.78■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 UNCXA6NJT0 531 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MCF2LO15068 1137 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 DHRS4L1P0CG22 281 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CCNG1P51959 295 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ACAP1Q15027 740 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 AP1ARQ63HQ0 302 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZNF449Q6P9G9 518 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PLPPR4Q7Z2D5 763 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ANKRD23Q86SG2 305 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MAB21L3Q8N8X9 362 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FAM13CQ8NE31 585 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RSRC1Q96IZ7 334 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SERAC1Q96JX3 654 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FGD4Q96M96 766 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CALN1Q9BXU9 219 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms