RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MED16Q9Y2X0 877 aa4.91□□□□□ -1.62
VPS50-219ENST00000495039 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS50-219ENST00000495039 POU2F2P09086 479 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 RECQLP46063 649 aaPredicted RBP4.9□□□□□ -1.63
VPS50-219ENST00000495039 RHDQ02161 417 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 SLC9C1Q4G0N8 1177 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 CERCAMQ5T4B2 595 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 EGFLAMQ63HQ2 1017 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 VSTM1Q6UX27 236 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 RANBP10Q6VN20 620 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 DCDC5Q6ZRR9 648 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 GAS2L3Q86XJ1 694 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 PELI3Q8N2H9 469 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 LINC01465Q8N7H1 131 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 ZBTB8BQ8NAP8 495 aaPredicted RBP4.9□□□□□ -1.63
VPS50-219ENST00000495039 TMEM171Q8WVE6 324 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 ICKQ9UPZ9 632 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 TNKSO95271 1327 aa4.9□□□□□ -1.63
VPS50-219ENST00000495039 LOC105371045A0A1W2PR82 267 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 LACTBL1A8MY62 500 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 KCNB1Q14721 858 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 KRTAP27-1Q3LI81 207 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 C16orf71Q8IYS4 520 aaPredicted RBP4.89□□□□□ -1.63
VPS50-219ENST00000495039 MMP21Q8N119 569 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 CELF5Q8N6W0 485 aaKnown RBP4.89□□□□□ -1.63
VPS50-219ENST00000495039 MAFAQ8NHW3 353 aaPredicted RBP4.89□□□□□ -1.63
VPS50-219ENST00000495039 BPIFB1Q8TDL5 484 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 HS6ST2Q96MM7 605 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 PPP1R10Q96QC0 940 aaKnown RBP4.89□□□□□ -1.63
VPS50-219ENST00000495039 ZBTB40Q9NUA8 1239 aa4.89□□□□□ -1.63
VPS50-219ENST00000495039 DRG1Q9Y295 367 aaKnown RBP4.89□□□□□ -1.63
VPS50-219ENST00000495039 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.89□□□□□ -1.63
VPS50-219ENST00000495039 DIO1P49895 249 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 HSF1Q00613 529 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 MTX1Q13505 466 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 CCNIQ14094 377 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 ZNF750Q32MQ0 723 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 USP43Q70EL4 1123 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 UBE2Q1Q7Z7E8 422 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 CATIPQ7Z7H3 387 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 CAMK1GQ96NX5 476 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 SLCO5A1Q9H2Y9 848 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 MLXIPQ9HAP2 919 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 SPC25Q9HBM1 224 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 GBA2Q9HCG7 927 aaPredicted RBP4.88□□□□□ -1.63
VPS50-219ENST00000495039 TXLNGQ9NUQ3 528 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 GAR1Q9NY12 217 aaKnown RBP4.88□□□□□ -1.63
VPS50-219ENST00000495039 LPAR3Q9UBY5 353 aa4.88□□□□□ -1.63
VPS50-219ENST00000495039 A0A087WWL8 130 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 C4orf47A7E2U8 309 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 SNUPNO95149 360 aaKnown RBP4.87□□□□□ -1.63
VPS50-219ENST00000495039 CDK11BP21127 795 aaKnown RBP4.87□□□□□ -1.63
VPS50-219ENST00000495039 ZNF585BQ52M93 769 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 CC2D1BQ5T0F9 858 aaKnown RBP4.87□□□□□ -1.63
VPS50-219ENST00000495039 DCP1BQ8IZD4 617 aaKnown RBP4.87□□□□□ -1.63
VPS50-219ENST00000495039 SPARTQ8N0X7 666 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 SLC15A4Q8N697 577 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 DNAJC5GQ8N7S2 189 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 PPP2R3CQ969Q6 453 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 MVB12AQ96EY5 273 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 ZPBPQ9BS86 351 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 ZSCAN32Q9NX65 697 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 CPA4Q9UI42 421 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 SPEF1Q9Y4P9 236 aa4.87□□□□□ -1.63
VPS50-219ENST00000495039 IGLV5-39A0A0G2JS06 123 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 TMPRSS11DO60235 418 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 PRKAR1BP31321 381 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 MTHFSP49914 203 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 BCAT1P54687 386 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 PLA1AQ53H76 456 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 ZNF628Q5EBL2 1059 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 LMBRD2Q68DH5 695 aaPredicted RBP4.86□□□□□ -1.63
VPS50-219ENST00000495039 NLRP4Q96MN2 994 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 GTPBP4Q9BZE4 634 aaKnown RBP4.86□□□□□ -1.63
VPS50-219ENST00000495039 PIH1D1Q9NWS0 290 aaKnown RBP4.86□□□□□ -1.63
VPS50-219ENST00000495039 USP22Q9UPT9 525 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 STXBP5LQ9Y2K9 1186 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 SBNO2Q9Y2G9 1366 aa4.86□□□□□ -1.63
VPS50-219ENST00000495039 ALG1L2C9J202 215 aa4.85□□□□□ -1.63
VPS50-219ENST00000495039 IL33O95760 270 aa4.85□□□□□ -1.63
VPS50-219ENST00000495039 CREB1P16220 341 aa4.85□□□□□ -1.63
VPS50-219ENST00000495039 CDKN1CP49918 316 aaPredicted RBP4.85□□□□□ -1.63
VPS50-219ENST00000495039 STIM1Q13586 685 aa4.85□□□□□ -1.63
VPS50-219ENST00000495039 FAM50AQ14320 339 aaKnown RBP4.85□□□□□ -1.63
VPS50-219ENST00000495039 FAM177A1Q8N128 213 aaPredicted RBP4.85□□□□□ -1.63
VPS50-219ENST00000495039 CTHRC1Q96CG8 243 aa4.85□□□□□ -1.63
VPS50-219ENST00000495039 MRGPRX1Q96LB2 322 aa4.85□□□□□ -1.63
VPS50-219ENST00000495039 MRPL44Q9H9J2 332 aaKnown RBP4.85□□□□□ -1.63
VPS50-219ENST00000495039 SEMA4BQ9NPR2 832 aaPredicted RBP4.85□□□□□ -1.63
VPS50-219ENST00000495039 TTC3P53804 2025 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 ERVV-2B6SEH9 535 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 FOXN3O00409 490 aaPredicted RBP4.84□□□□□ -1.63
VPS50-219ENST00000495039 ATF7P17544 494 aaPredicted RBP4.84□□□□□ -1.63
VPS50-219ENST00000495039 TNFRSF1BP20333 461 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 EPHA3P29320 983 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 TACR3P29371 465 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 CDC25AP30304 524 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 CPA2P48052 419 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 YPEL5P62699 121 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 ZXDBP98169 803 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms