RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	RPL6	Q02878	288 aa	Known RBP	18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	GAD2	Q05329	585 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	SF3A1	Q15459	793 aa	Known RBP	18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	SURF1	Q15526	300 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	EMC10	Q5UCC4	262 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	TDRD10	Q5VZ19	366 aa	Known RBP	18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	GPD1L	Q8N335	351 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	NOC3L	Q8WTT2	800 aa	Known RBP	18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	DNAJC19	Q96DA6	116 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	GTPBP2	Q9BX10	602 aa	Known RBP	18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	CAPN10	Q9HC96	672 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	CACNA1E	Q15878	2313 aa		18.83	■□□□□ 0.6
NUP50-218	ENST00000493456	PCNX2	A6NKB5	2137 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	E2F8	A0AVK6	867 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	MBL2	P11226	248 aa	Predicted RBP	18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	CASP5	P51878	434 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	TAF10	Q12962	218 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	BTBD8	Q5XKL5	378 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	NUDT18	Q6ZVK8	323 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	SV2B	Q7L1I2	683 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	PHTF2	Q8N3S3	785 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	PDZD8	Q8NEN9	1154 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	EPSTI1	Q96J88	318 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	DUSP9	Q99956	384 aa	Known RBP	18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	PI4KA	P42356	2102 aa		18.82	■□□□□ 0.6
NUP50-218	ENST00000493456	TBC1D3B	A6NDS4	549 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	SCAMP3	O14828	347 aa	Known RBP	18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	SYP	P08247	313 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	PDGFRB	P09619	1106 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	RABEP1	Q15276	862 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	DUOXA2	Q1HG44	320 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	MDH1B	Q5I0G3	518 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	LY6G5C	Q5SRR4	150 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	RAB44	Q7Z6P3	723 aa	Predicted RBP	18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	PROSER1	Q86XN7	944 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	ETFBKMT	Q8IXQ9	262 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	MINDY1	Q8N5J2	469 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	ZNF513	Q8N8E2	541 aa	Predicted RBP	18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	OR5B17	Q8NGF7	314 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	OVCA2	Q8WZ82	227 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	MMS19	Q96T76	1030 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	ELOVL4	Q9GZR5	314 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	PCIF1	Q9H4Z3	704 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	FSCN3	Q9NQT6	498 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	DNAAF2	Q9NVR5	837 aa	Known RBP	18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	PPP4R2	Q9NY27	417 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	PCDH15	Q96QU1	1955 aa		18.81	■□□□□ 0.6
NUP50-218	ENST00000493456	PTPRJ	Q12913	1337 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	CELSR3	Q9NYQ7	3312 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	FRMD3	A2A2Y4	597 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	TAF4	O00268	1085 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	ARHGAP33	O14559	1287 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	HOXC11	O43248	304 aa	Predicted RBP	18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	ZNF217	O75362	1048 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	TACC1	O75410	805 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	GABRG2	P18507	467 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	TXLNA	P40222	546 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	ZNF33A	Q06730	810 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	SLC14A1	Q13336	389 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	RRAGB	Q5VZM2	374 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	HS2ST1	Q7LGA3	356 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	WDR49	Q8IV35	697 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	TMX3	Q96JJ7	454 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	SNX25	Q9H3E2	840 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	ZDHHC4	Q9NPG8	344 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	CALCOCO1	Q9P1Z2	691 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456	DEC1	Q9P2X7	70 aa		18.8	■□□□□ 0.6
NUP50-218	ENST00000493456		A0A1W2PQD8	194 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	ZNF233	A6NK53	670 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	ZBTB24	O43167	697 aa	Predicted RBP	18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	RTN3	O95197	1032 aa	Predicted RBP	18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	FAM163B	P0C2L3	166 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	HOXB2	P14652	356 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	IDE	P14735	1019 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	GNL1	P36915	607 aa	Predicted RBP	18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	LARP1B	Q659C4	914 aa	Known RBP	18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	USP49	Q70CQ1	688 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	NUP93	Q8N1F7	819 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	CHCHD4	Q8N4Q1	142 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	TERB1	Q8NA31	727 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	ZFR	Q96KR1	1074 aa	Known RBP	18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	SMC3	Q9UQE7	1217 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	SH3BP1	Q9Y3L3	701 aa		18.79	■□□□□ 0.6
NUP50-218	ENST00000493456	COCH	O43405	550 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	TULP3	O75386	442 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	PRPF6	O94906	941 aa	Known RBP	18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	CAPNS1	P04632	268 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	CD59	P13987	128 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	YWHAQ	P27348	245 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	NTSR1	P30989	418 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	TUB	P50607	506 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	FAM193A	P78312	1265 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	IFRD2	Q12894	506 aa	Predicted RBP	18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	C10orf76	Q5T2E6	689 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	STXBP4	Q6ZWJ1	553 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	OR6B3	Q8NGW1	331 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	FBXO32	Q969P5	355 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	MRPL45	Q9BRJ2	306 aa	Known RBP	18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	FGFBP2	Q9BYJ0	223 aa		18.78	■□□□□ 0.6
NUP50-218	ENST00000493456	KIAA1586	Q9HCI6	787 aa		18.78	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms