RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 FAM107AO95990 144 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 PCYT1AP49585 367 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 HERVK_113P62684 666 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 UNC45BQ8IWX7 931 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 SERPINB12Q96P63 405 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 CCDC134Q9H6E4 229 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 NT5MQ9NPB1 228 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 RAD18Q9NS91 495 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 KRT87PA6NCN2 255 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 CYTH3O43739 400 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 BCAT1P54687 386 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 Q4G0T1 1027 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 CENPPQ6IPU0 288 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 DIS3LQ8TF46 1054 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 RXFP2Q8WXD0 754 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 CELF6Q96J87 481 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 SDR42E2A6NKP2 422 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 SERPINB10P48595 397 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 PRIM2P49643 509 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 UGT3A1Q6NUS8 523 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 ERAP2Q6P179 960 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 OOSP2Q86WS3 158 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 ERLEC1Q96DZ1 483 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 PRPF18Q99633 342 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 PIH1D1Q9NWS0 290 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 HEY2Q9UBP5 337 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 AAR2Q9Y312 384 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 CNTNAP2Q9UHC6 1331 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 CLTCQ00610 1675 aaKnown RBP17.75■□□□□ 0.43
PTPRF-209ENST00000438120 DCDC2CA8MYV0 355 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 TKTL1P51854 596 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 COPAP53621 1224 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 CXCL9Q07325 125 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 LRRC8BQ6P9F7 803 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 TRPC5OSA6NMA1 111 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 F8W810 466 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 SPOCD1Q6ZMY3 1216 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 PLEKHM3Q6ZWE6 761 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 MROH8Q9H579 483 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 ATP11BQ9Y2G3 1177 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 F8VZ95 297 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 GARTP22102 1010 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 TTLL9Q3SXZ7 439 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 TRAPPC12Q8WVT3 735 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 CNBD2Q96M20 576 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 KBTBD4Q9NVX7 518 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 KRT16P08779 473 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 GMCL1P1Q8NEA9 526 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 DNAJB3Q8WWF6 145 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 ZFP42Q96MM3 310 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 PDCD2LQ9BRP1 358 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 CIPCQ9C0C6 399 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 PABPC3Q9H361 631 aaKnown RBP17.75■□□□□ 0.43
PTPRF-209ENST00000438120 DAB1O75553 588 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 MLNP12872 115 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 PGM5Q15124 567 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 C3orf67Q6ZVT6 689 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 STRA8Q7Z7C7 330 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 KIRREL3Q8IZU9 778 aa17.75■□□□□ 0.43
PTPRF-209ENST00000438120 VPS26AO75436 327 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 ALDH6A1Q02252 535 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 TBL3Q12788 808 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 DYNC1I2Q13409 638 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 PTAR1Q7Z6K3 402 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 DNAJC9Q8WXX5 260 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 USE1Q9NZ43 259 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 CEMIPQ8WUJ3 1361 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 DDNO94850 711 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 BMPR2Q13873 1038 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 PDK2Q15119 407 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 SEC23AQ15436 765 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 PGS1Q32NB8 556 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 GMCL1Q96IK5 515 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 RHOAP61586 193 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 IYDQ6PHW0 289 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 C10orf53Q8N6V4 93 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 LACRTQ9GZZ8 138 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 STARD7Q9NQZ5 370 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 EIF3LQ9Y262 564 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 H3BRB1 525 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 GUCA1CO95843 209 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 RHOCP08134 193 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 AASDHQ4L235 1098 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 SV2AQ7L0J3 742 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 P3H2Q8IVL5 708 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 CD302Q8IX05 232 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 ELOA2Q8IYF1 753 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 ZNF614Q8N883 585 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 RBBP8Q99708 897 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 TUT1Q9H6E5 874 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 GBA2Q9HCG7 927 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 DDX43Q9NXZ2 648 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 TRPM5Q9NZQ8 1165 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 HAO1Q9UJM8 370 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 INO80Q9ULG1 1556 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 GLRA3O75311 464 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 H2AFYO75367 372 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 URODP06132 367 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 INSRRP14616 1297 aa17.74■□□□□ 0.43
PTPRF-209ENST00000438120 WDR49Q8IV35 697 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms