RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DMAC2Q9NW81 257 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 RCOR1Q9UKL0 485 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 MYO16Q9Y6X6 1858 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 SDK1Q7Z5N4 2213 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 TNFRSF10BO14763 440 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 AP1G2O75843 785 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 KLF8O95600 359 aaPredicted RBP12.28□□□□□ -0.44
USP4-204ENST00000416417 STAU1O95793 577 aaKnown RBP12.28□□□□□ -0.44
USP4-204ENST00000416417 ADRB1P08588 477 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 PDE6CP51160 858 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 SNRPFP62306 86 aaKnown RBP12.28□□□□□ -0.44
USP4-204ENST00000416417 CREB5Q02930 508 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 PLA2G2CQ5R387 149 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 LY6G5CQ5SRR4 150 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 CEP135Q66GS9 1140 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 IL31Q6EBC2 164 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 TMEM92Q6UXU6 159 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 FUKQ8N0W3 1084 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 FRMD1Q8N878 549 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 ZMIZ2Q8NF64 920 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 RLN3Q8WXF3 142 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 EXOC4Q96A65 974 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 ACDQ96AP0 544 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 SMOQ99835 787 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 KCTD10Q9H3F6 313 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 KRT82Q9NSB4 513 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 CIZ1Q9ULV3 898 aaPredicted RBP12.28□□□□□ -0.44
USP4-204ENST00000416417 MAPK8IP1Q9UQF2 711 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 SPTBN2O15020 2390 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 KIAA1549LQ6ZVL6 1849 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 RALGAPA1Q6GYQ0 2036 aa12.28□□□□□ -0.44
USP4-204ENST00000416417 SGK1O00141 431 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 TRIM24O15164 1050 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 KRT37O76014 449 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 NR3C1P04150 777 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 FAM163BP0C2L3 166 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 ADORA2BP29275 332 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 NDST1P52848 882 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 MAP3K7CLP57077 242 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 C1orf220Q5T0J3 134 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 STPG1Q5TH74 334 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 BBS7Q8IWZ6 715 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 C12orf29Q8N999 325 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 TXNDC5Q8NBS9 432 aaKnown RBP12.27□□□□□ -0.44
USP4-204ENST00000416417 MDGA1Q8NFP4 955 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 SLC2A14Q8TDB8 520 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 LOXL4Q96JB6 756 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 ZC3H10Q96K80 434 aaKnown RBP12.27□□□□□ -0.44
USP4-204ENST00000416417 CEP295NLQ96MC4 621 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 MMRN2Q9H8L6 949 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 EHD2Q9NZN4 543 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 CGNQ9P2M7 1197 aaKnown RBP12.27□□□□□ -0.44
USP4-204ENST00000416417 MMP17Q9ULZ9 603 aa12.27□□□□□ -0.44
USP4-204ENST00000416417 LAMA1P25391 3075 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 PATE3B3GLJ2 98 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 AKAP3O75969 853 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 RTN3O95197 1032 aaPredicted RBP12.27□□□□□ -0.45
USP4-204ENST00000416417 KAT7O95251 611 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 TBX18O95935 607 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 HLA-DRAP01903 254 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 TRIM49P0CI25 452 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 TRIM49CP0CI26 452 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 CHRM1P11229 460 aaPredicted RBP12.27□□□□□ -0.45
USP4-204ENST00000416417 ADH5P11766 374 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 PDIA4P13667 645 aaKnown RBP12.27□□□□□ -0.45
USP4-204ENST00000416417 PPP3CCP48454 512 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 CLDN10P78369 228 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 ELF2Q15723 593 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 HECTD3Q5T447 861 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 SV2AQ7L0J3 742 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 GPRIN1Q7Z2K8 1008 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 IL17RCQ8NAC3 791 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 TWNKQ96RR1 684 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 PNKPQ96T60 521 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 VRTNQ9H8Y1 702 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 DMAP1Q9NPF5 467 aaPredicted RBP12.27□□□□□ -0.45
USP4-204ENST00000416417 ARHGEF4Q9NR80 690 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 EBF1Q9UH73 591 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 NUDT5Q9UKK9 219 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 CFAP45Q9UL16 551 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 ZDHHC9Q9Y397 364 aa12.27□□□□□ -0.45
USP4-204ENST00000416417 ATP8B3O60423 1300 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 TM4SF5O14894 197 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 MDM4O15151 490 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 CAVIN2O95810 425 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 RPN1P04843 607 aaKnown RBP12.26□□□□□ -0.45
USP4-204ENST00000416417 APODP05090 189 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 PFKLP17858 780 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 PIK3CAP42336 1068 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 WASP42768 502 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 ASPAP45381 313 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 NDUFA8P51970 172 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 CRY1Q16526 586 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 ZACNQ401N2 412 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 N4BP2L1Q5TBK1 243 aaPredicted RBP12.26□□□□□ -0.45
USP4-204ENST00000416417 ARMCX6Q7L4S7 300 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 TMEM25Q86YD3 366 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 GOLGA5Q8TBA6 731 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 SMARCD1Q96GM5 515 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 TNIP3Q96KP6 325 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms