RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SREBF2Q12772 1141 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 TFDP2Q14188 446 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 STAT4Q14765 748 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 NOMO1Q15155 1222 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 NBPF20Q3BBV1 942 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 CCDC38Q502W7 563 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 FAM47CQ5HY64 1035 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 SCYL2Q6P3W7 929 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 CXCL17Q6UXB2 119 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 SLC26A9Q7LBE3 791 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 ARCQ7LC44 396 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 MAP7D3Q8IWC1 876 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 TOP6BLQ8N6T0 577 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 SLC2A14Q8TDB8 520 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 CLEC4CQ8WTT0 213 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 ZFP42Q96MM3 310 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 XPO6Q96QU8 1125 aaKnown RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 TBCBQ99426 244 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 C11orf84Q9BUA3 381 aaPredicted RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 CTNNAL1Q9UBT7 734 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 M0QZ92 97 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 WARSP23381 471 aaKnown RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 PTPN9P43378 593 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 CTCFP49711 727 aaPredicted RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 HDAC4P56524 1084 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 GDF6Q6KF10 455 aaPredicted RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 CYP4F22Q6NT55 531 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 NPNTQ6UXI9 565 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 ATXN2LQ8WWM7 1075 aaKnown RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 TRIB2Q92519 343 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 CPT1BQ92523 772 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 ARHGEF2Q92974 986 aaKnown RBP21.02■□□□□ 0.96
USP39-204ENST00000409766 TNIP3Q96KP6 325 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 TTC25Q96NG3 672 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 NCAPGQ9BPX3 1015 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 DNAI2Q9GZS0 605 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 LGALS13Q9UHV8 139 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 TRPV2Q9Y5S1 764 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 TLL2Q9Y6L7 1015 aa21.02■□□□□ 0.96
USP39-204ENST00000409766 ALOX15BO15296 676 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 PGK1P00558 417 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 ATP5DP30049 168 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 KRT81Q14533 505 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 FASTKD3Q14CZ7 662 aaKnown RBP21.01■□□□□ 0.95
USP39-204ENST00000409766 ZC3H12AQ5D1E8 599 aaKnown RBP21.01■□□□□ 0.95
USP39-204ENST00000409766 OSTM1Q86WC4 334 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 VSIG1Q86XK7 387 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 PPIL6Q8IXY8 311 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 FAM71DQ8N9W8 422 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 P3H4Q92791 437 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 WNT8BQ93098 351 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 HSFY1Q96LI6 401 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 CCDC77Q9BR77 488 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 UPF3AQ9H1J1 476 aaKnown RBP21.01■□□□□ 0.95
USP39-204ENST00000409766 ST3GAL5Q9UNP4 418 aa21.01■□□□□ 0.95
USP39-204ENST00000409766 MEIS3P2A8K0S8 358 aa21■□□□□ 0.95
USP39-204ENST00000409766 MDM4O15151 490 aa21■□□□□ 0.95
USP39-204ENST00000409766 DESP17661 470 aa21■□□□□ 0.95
USP39-204ENST00000409766 TFE3P19532 575 aaPredicted RBP21■□□□□ 0.95
USP39-204ENST00000409766 TKTP29401 623 aaKnown RBP21■□□□□ 0.95
USP39-204ENST00000409766 ACADSBP45954 432 aa21■□□□□ 0.95
USP39-204ENST00000409766 B4GALNT4Q76KP1 1039 aa21■□□□□ 0.95
USP39-204ENST00000409766 NAT8LQ8N9F0 302 aa21■□□□□ 0.95
USP39-204ENST00000409766 B3GALNT2Q8NCR0 500 aa21■□□□□ 0.95
USP39-204ENST00000409766 GSTCDQ8NEC7 633 aa21■□□□□ 0.95
USP39-204ENST00000409766 CENPIQ92674 756 aaPredicted RBP21■□□□□ 0.95
USP39-204ENST00000409766 SNRNP25Q9BV90 132 aaKnown RBP21■□□□□ 0.95
USP39-204ENST00000409766 ARHGAP39Q9C0H5 1083 aa21■□□□□ 0.95
USP39-204ENST00000409766 PCDH18Q9HCL0 1135 aa21■□□□□ 0.95
USP39-204ENST00000409766 GPATCH2LQ9NWQ4 482 aa21■□□□□ 0.95
USP39-204ENST00000409766 EURLQ9NYK6 297 aa21■□□□□ 0.95
USP39-204ENST00000409766 A0A087WUV0 522 aaPredicted RBP21■□□□□ 0.95
USP39-204ENST00000409766 CA12O43570 354 aa21■□□□□ 0.95
USP39-204ENST00000409766 CDH16O75309 829 aa21■□□□□ 0.95
USP39-204ENST00000409766 LCP1P13796 627 aa21■□□□□ 0.95
USP39-204ENST00000409766 ANKRD22Q5VYY1 191 aa21■□□□□ 0.95
USP39-204ENST00000409766 CENPUQ71F23 418 aa21■□□□□ 0.95
USP39-204ENST00000409766 PLD5Q8N7P1 536 aa21■□□□□ 0.95
USP39-204ENST00000409766 ADAM33Q9BZ11 813 aa21■□□□□ 0.95
USP39-204ENST00000409766 GABRQQ9UN88 632 aa21■□□□□ 0.95
USP39-204ENST00000409766 CAPN15O75808 1086 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 CHRNA1P02708 482 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 STIP1P31948 543 aaKnown RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 TM4SF4P48230 202 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 ROR1Q01973 937 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 CA9Q16790 459 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 ANKRD20A8PQ5CZ79 823 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 MFSD14CQ5VZR4 134 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 RSPH3Q86UC2 560 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 CYP4X1Q8N118 509 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 PQLC3Q8N755 202 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 HNRNPABQ99729 332 aaKnown RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 PHACTR1Q9C0D0 580 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 SENP6Q9GZR1 1112 aaPredicted RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 FAM107BQ9H098 131 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 FAM105AQ9NUU6 356 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 INTS9Q9NV88 658 aaKnown RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 NAALADL1Q9UQQ1 740 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms