RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 GLUD1P00367 558 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 BDNFP23560 247 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 CYP2F1P24903 491 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 ELF1P32519 619 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 CLCN4P51793 760 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 CLUL1Q15846 466 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 DUSP6Q16828 381 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 LCLAT1Q6UWP7 414 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 NOP9Q86U38 636 aaKnown RBP14.13□□□□□ -0.15
LIMS1-204ENST00000409441 IFT20Q8IY31 132 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 SPPL2BQ8TCT7 592 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 EPS8L1Q8TE68 723 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 SLC22A17Q8WUG5 538 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 SLC20A1Q8WUM9 679 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 PPP2R3CQ969Q6 453 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 GAS2L1Q99501 681 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-204ENST00000409441 RHOBTB2Q9BYZ6 727 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 ZNF518BQ9C0D4 1074 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 IGFLR1Q9H665 355 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 MED4Q9NPJ6 270 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 SEPT11Q9NVA2 429 aaKnown RBP14.13□□□□□ -0.15
LIMS1-204ENST00000409441 SMARCAL1Q9NZC9 954 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 DMGDHQ9UI17 866 aaKnown RBP14.13□□□□□ -0.15
LIMS1-204ENST00000409441 MAFFQ9ULX9 164 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 TSC2P49815 1807 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 PGRMC1O00264 195 aaKnown RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 MTA2O94776 668 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 SEC24AO95486 1093 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 C1RP00736 705 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 SSTR3P32745 418 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TNNT3P45378 269 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 PDE6CP51160 858 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 GPC5P78333 572 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 NNTQ13423 1086 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 STILQ15468 1287 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TCEAL5Q5H9L2 206 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TAF3Q5VWG9 929 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 C11orf63Q6NUN7 778 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 EMBQ6PCB8 327 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 DEFB123Q8N688 67 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 ANKRD52Q8NB46 1076 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 FAM71BQ8TC56 605 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 DDX1Q92499 740 aaKnown RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 FUBP3Q96I24 572 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 CDCA3Q99618 268 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 CDX2Q99626 313 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 CRISPLD1Q9H336 500 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 CYP4F11Q9HBI6 524 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 ST7Q9NRC1 585 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 NOCTQ9UK39 431 aaKnown RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TSPAN16Q9UKR8 245 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TTC7AQ9ULT0 858 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TRANK1O15050 2925 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TMCO5BA8MYB1 307 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 PRRG1O14668 218 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 BUB1BO60566 1050 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 MICAL2O94851 1124 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 CFHP08603 1231 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 HAPLN1P10915 354 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 ABCB4P21439 1286 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TUFMP49411 452 aaKnown RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 DNA2P51530 1060 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 CDR2Q01850 454 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 GOLGA7BQ2TAP0 167 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 HSP90B2PQ58FF3 399 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 FAM35AQ86V20 835 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 DNAAF5Q86Y56 855 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TCEAL8Q8IYN2 117 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 TTC9BQ8N6N2 239 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 EIF1ADQ8N9N8 165 aaKnown RBP14.12□□□□□ -0.15
LIMS1-204ENST00000409441 KREMEN2Q8NCW0 462 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 UBA3Q8TBC4 463 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.12□□□□□ -0.153e-6■■■■■ 50.8
LIMS1-204ENST00000409441 CAVIN3Q969G5 261 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 ARHGEF26Q96DR7 871 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 DUSP16Q9BY84 665 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 THAP2Q9H0W7 228 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 GDF3Q9NR23 364 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 HSFX1Q9UBD0 423 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 HESX1Q9UBX0 185 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 HPCAL4Q9UM19 191 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 HCFC2Q9Y5Z7 792 aa14.12□□□□□ -0.15
LIMS1-204ENST00000409441 H3BQF6 201 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 CEP104O60308 925 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 ZMYND10O75800 440 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 AP1G2O75843 785 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 FTLP02792 175 aaPredicted RBP14.11□□□□□ -0.15
LIMS1-204ENST00000409441 MMEP08473 750 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 FAM200BP0CF97 657 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 EPCAMP16422 314 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 CHRNB2P17787 502 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 GRIK1P39086 918 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 MAGEA11P43364 429 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 CACNA2D1P54289 1103 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 HYAL1Q12794 435 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 MGAT5BQ3V5L5 792 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 LLGL2Q6P1M3 1020 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 VSTM1Q6UX27 236 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 ZNF677Q86XU0 584 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms