RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TRNP1Q6NT89 227 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RNF19BQ6ZMZ0 732 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RHOT1Q8IXI2 618 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CMTR2Q8IYT2 770 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 VPS52Q8N1B4 723 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 FIBCD1Q8N539 461 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 COLGALT1Q8NBJ5 622 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 NOA1Q8NC60 698 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 FBXO22Q8NEZ5 403 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RNF25Q96BH1 459 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 PKMYT1Q99640 499 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RAB6CQ9H0N0 254 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CARD9Q9H257 536 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RC3H2Q9HBD1 1191 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ASNSD1Q9NWL6 643 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SPG21Q9NZD8 308 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TMEM59LQ9UK28 342 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 INSL6Q9Y581 213 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PCDHB5Q9Y5E4 795 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PCDHB12Q9Y5F1 795 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PCDHA3Q9Y5H8 950 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 FNDC1Q4ZHG4 1894 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 CHD9Q3L8U1 2897 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 LCHNA4D1U4 455 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 YJEFN3A6XGL0 299 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 E7ENQ6 273 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KRIT1O00522 736 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TADA3O75528 432 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SOD2P04179 222 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RHOXF2BP0C7M4 288 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 DESP17661 470 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TFE3P19532 575 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 MIPP30301 263 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SLC5A3P53794 718 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 GSCP56915 257 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 YWHAZP63104 245 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 MRPL58Q14197 206 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ELF2Q15723 593 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CCDC14Q49A88 953 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 EFHC1Q5JVL4 640 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KAZNQ674X7 775 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 HFE2Q6ZVN8 426 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SLC26A9Q7LBE3 791 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 HERC6Q8IVU3 1022 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KLHL7Q8IXQ5 586 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 DEFB106AQ8N104 65 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SLC39A11Q8N1S5 342 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ARFGAP1Q8N6T3 406 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SPATA4Q8NEY3 305 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ADAM32Q8TC27 787 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 FAM172AQ8WUF8 416 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KCTD13Q8WZ19 329 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 HSPH1Q92598 858 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 EDEM1Q92611 657 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 GOLGA1Q92805 767 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KHSRPQ92945 711 aaKnown RBP eCLIP3.89□□□□□ -1.793e-8■■□□□ 11.5
RTN4-208ENST00000404909 ABHD8Q96I13 439 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RHOXF2Q9BQY4 288 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CNPY3Q9BT09 278 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 HEMGNQ9BXL5 484 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 AAASQ9NRG9 546 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RBM12Q9NTZ6 932 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 LRRD1A4D1F6 860 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 EFCAB8A8MWE9 144 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 GRXCR1A8MXD5 290 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PSTPIP1O43586 416 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PRPSAP2O60256 369 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 HSF2BPO75031 334 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 FGF18O76093 207 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 FBXO21O94952 628 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 ZRANB2O95218 330 aaKnown RBP eCLIP3.88□□□□□ -1.79
RTN4-208ENST00000404909 KRT1P04264 644 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 URODP06132 367 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NCAM1P13591 858 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MYOGP15173 224 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CTNNA2P26232 953 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 IL1R2P27930 398 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MAN1A1P33908 653 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 GLUD2P49448 558 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 ATXN1P54253 815 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 KRT17Q04695 432 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NME3Q13232 169 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 GPR17Q13304 367 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 HADHQ16836 314 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 SYPL2Q5VXT5 272 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 FNIP1Q8TF40 1166 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 RAD9AQ99638 391 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PLVAPQ9BX97 442 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MTIF3Q9H2K0 278 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 CRISPLD1Q9H336 500 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CSNK1G1Q9HCP0 422 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 ALG13Q9NP73 1137 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 CYLDQ9NQC7 956 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CNGB3Q9NQW8 809 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.88□□□□□ -1.79
RTN4-208ENST00000404909 USP18Q9UMW8 372 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NAALADL1Q9UQQ1 740 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 SZT2Q5T011 3432 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 VWA8A3KMH1 1905 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 WDR27A2RRH5 827 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms