RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 UBA6A0AVT1 1052 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 AGAP14A8MT82 685 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 AP3D1O14617 1153 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PIP5K1BO14986 540 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 GOSR1O95249 250 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SLC4A1P02730 911 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TK1P04183 234 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ANXA2P07355 339 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ITGA2BP08514 1039 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MYL4P12829 197 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ABCD3P28288 659 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ACSL1P33121 698 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ABCD1P33897 745 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MCAMP43121 646 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ADCY7P51828 1080 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 BPIFB4P59827 614 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SLC6A3Q01959 620 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MGAT2Q10469 447 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 RRP1BQ14684 758 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MMEL1Q495T6 779 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PARP10Q53GL7 1025 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ARHGAP15Q53QZ3 475 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TTC38Q5R3I4 469 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 IGFL4Q6B9Z1 124 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MFSD5Q6N075 450 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 NFRKBQ6P4R8 1299 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 BBS12Q6ZW61 710 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 HEATR3Q7Z4Q2 680 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 GLIS1Q8NBF1 620 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 OR1N1Q8NGS0 311 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 OR2I1PQ8NGU4 316 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 AFG1LQ8WV93 481 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ANP32BQ92688 251 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 NMD3Q96D46 503 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 FAM167AQ96KS9 214 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SNX22Q96L94 193 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MRGPRX1Q96LB2 322 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TCF25Q9BQ70 676 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PI4K2AQ9BTU6 479 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 DDX23Q9BUQ8 820 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SEPSECSQ9HD40 501 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 CPA4Q9UI42 421 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 HDAC5Q9UQL6 1122 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PCDHA13Q9Y5I0 950 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TMEM191CA6NGB0 347 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 INO80B-WBP1J3KQ70 363 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 UBE2CO00762 179 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 KIAA0355O15063 1070 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 THAP12O43422 761 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 RAMP2O60895 175 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 MFAP3LO75121 409 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 B3GALNT1O75752 331 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 PFKMP08237 780 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 THEGLP0DJG4 465 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 NR2F1P10589 423 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 P4HA1P13674 534 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 TYRP14679 529 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 ATP5DP30049 168 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 HNF4AP41235 474 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 MSH2P43246 934 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 NLRP5P59047 1200 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 MRPS35P82673 323 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 CREB5Q02930 508 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 PPARDQ03181 441 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 AP1B1Q10567 949 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 MYBPC3Q14896 1274 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 GAGE13Q4V321 117 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 CC2D1BQ5T0F9 858 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 SLFN12LQ6IEE8 588 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 CNSTQ6PJW8 725 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 FAM111BQ6SJ93 734 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 SLC22A25Q6T423 547 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 KLHL17Q6TDP4 642 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 IL27RAQ6UWB1 636 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 R3HCC1LQ7Z5L2 792 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 OR8H3Q8N146 312 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 C3orf20Q8ND61 904 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 OR5AN1Q8NGI8 311 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 OR14C36Q8NHC7 312 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 GOT1L1Q8NHS2 421 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 TBC1D22AQ8WUA7 517 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 RPL10LQ96L21 214 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 P2RX7Q99572 595 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 MYL10Q9BUA6 226 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 PABPC3Q9H361 631 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 AGO3Q9H9G7 860 aaKnown RBP4.51□□□□□ -1.69
HMGB1-204ENST00000399489 PRDM8Q9NQV8 689 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 SACM1LQ9NTJ5 587 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 KCMF1Q9P0J7 381 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 TBX20Q9UMR3 447 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 CDY2AQ9Y6F7 541 aa4.51□□□□□ -1.69
HMGB1-204ENST00000399489 ST20-MTHFSA0A0A6YYL1 179 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 TRIM43BA6NCK2 446 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 NT5C1B-RDH14C9J2C7 533 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 GTPBP1O00178 669 aaKnown RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 TBCAO75347 108 aaKnown RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 MT-ND5P03915 603 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 RPLP2P05387 115 aaKnown RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 CSH1P0DML2 217 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 CSH2P0DML3 217 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms