RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 TPD52L1Q16890 204 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 EDRF1Q3B7T1 1238 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SLC9C1Q4G0N8 1177 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 INO80DQ53TQ3 878 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 TCP11X2Q5H9J9 407 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 RALGPS1Q5JS13 557 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ZNF648Q5T619 568 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 CDCA2Q69YH5 1023 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 STXBP4Q6ZWJ1 553 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SYCP3Q8IZU3 236 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 C7orf31Q8N865 590 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 PCSK9Q8NBP7 692 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 RNF149Q8NC42 400 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SLC17A8Q8NDX2 589 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 NOC3LQ8WTT2 800 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 DNAJB3Q8WWF6 145 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 HVCN1Q96D96 273 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ZBTB45Q96K62 511 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 SCYL1Q96KG9 808 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 MRGPRX3Q96LB0 322 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CCDC74BQ96LY2 380 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 DEFB118Q96PH6 123 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 TSG101Q99816 390 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 FDXACB1Q9BRP7 624 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 CBWD1Q9BRT8 395 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 KATNAL1Q9BW62 490 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 XPO4Q9C0E2 1151 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 HAPLN2Q9GZV7 340 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 FAM49AQ9H0Q0 323 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 GBP3Q9H0R5 595 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 FZD8Q9H461 694 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 PCIF1Q9H4Z3 704 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 IFT22Q9H7X7 185 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 IFT122Q9HBG6 1241 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 TAB2Q9NYJ8 693 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SLAMF8Q9P0V8 285 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA6CA6NDK9 693 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA6BA6NDN3 693 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 TEX33O43247 280 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 B4GALT5O43286 388 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 CALUO43852 315 aaPredicted RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 MSCO60682 206 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 AKAP3O75969 853 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 PIGRP01833 764 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 ESR1P03372 595 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA6DP0CG33 693 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 NR2F2P24468 414 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 CTCFP49711 727 aaPredicted RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 CYP2J2P51589 502 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 GPC3P51654 580 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 ZNF143P52747 638 aaPredicted RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 COPB1P53618 953 aaKnown RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 UBASH3AP57075 661 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 NLRP11P59045 1033 aaKnown RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 TPM4P67936 248 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 MBTD1Q05BQ5 628 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 POU5F1BQ06416 359 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 ITGA7Q13683 1181 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 GRM3Q14832 879 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 ODF1Q14990 250 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 NR1I3Q14994 352 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 KIZQ2M2Z5 673 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 INAVAQ3KP66 663 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 MIIPQ5JXC2 388 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 HEATR6Q6AI08 1181 aaKnown RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 FBXO46Q6PJ61 603 aaPredicted RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 SESTD1Q86VW0 696 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 CREBRFQ8IUR6 639 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 C12orf56Q8IXR9 622 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 DTWD2Q8NBA8 298 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 ARRDC4Q8NCT1 418 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 TMEM174Q8WUU8 243 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 BTN2A2Q8WVV5 523 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 USP7Q93009 1102 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 BORCS6Q96GS4 357 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 PDLIM2Q96JY6 352 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 CNOT6LQ96LI5 555 aaKnown RBP3.84□□□□□ -1.79
MCF2-202ENST00000370573 NLRP4Q96MN2 994 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 PPP1R9BQ96SB3 815 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 SARGQ9BW04 601 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 TRIM5Q9C035 493 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 TMEM206Q9H813 350 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 C19orf73Q9NVV2 129 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA6AQ9NYA3 693 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 KCNG1Q9UIX4 513 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 OGDHLQ9ULD0 1010 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 AKT3Q9Y243 479 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 ZNF451Q9Y4E5 1061 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 STYXL1Q9Y6J8 313 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 SIP14410 1827 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 FRMPD3Q5JV73 1810 aa3.84□□□□□ -1.79
MCF2-202ENST00000370573 A0A1W2PQ45 241 aaPredicted RBP3.84□□□□□ -1.8
MCF2-202ENST00000370573 A0A1W2PQY0 241 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 SHISA3A0PJX4 238 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 GOLGA8IPA6NC78 632 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 GOLGA8JA6NMD2 632 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 H0YCG3 227 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 INO80B-WBP1J3KQ70 363 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 ABLIM1O14639 778 aa3.84□□□□□ -1.8
MCF2-202ENST00000370573 CETN3O15182 167 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms