RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 AGGF1Q8N302 714 aaeCLIP16.13■□□□□ 0.17
UPF3B-202ENST00000345865 PQLC3Q8N755 202 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 MZB1Q8WU39 189 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 RNF157Q96PX1 679 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 SMC6Q96SB8 1091 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 DHRS4Q9BTZ2 278 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 PHACTR1Q9C0D0 580 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 USP29Q9HBJ7 922 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 SLCO1B3Q9NPD5 702 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 KIAA1257Q9ULG3 409 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 ARL2BPQ9Y2Y0 163 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 NDC80O14777 642 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 PRPSAP2O60256 369 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 HOXD8P13378 290 aaPredicted RBP16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ROR1Q01973 937 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ZBTB6Q15916 424 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ICE2Q659A1 982 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 SCYL2Q6P3W7 929 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 FAM228AQ86W67 206 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 NT5DC4Q86YG4 428 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 PLD5Q8N7P1 536 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ATP11CQ8NB49 1132 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 SLC35F5Q8WV83 523 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 PITPNM3Q9BZ71 974 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 FAM49AQ9H0Q0 323 aaPredicted RBP16.12■□□□□ 0.17
UPF3B-202ENST00000345865 DPEP3Q9H4B8 488 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ACSS3Q9H6R3 686 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 PAPSS1O43252 624 aaPredicted RBP16.12■□□□□ 0.17
UPF3B-202ENST00000345865 AVILO75366 819 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 KRT4P19013 534 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 CA4P22748 312 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 SLC18A1P54219 525 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 DUSP28Q4G0W2 176 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ADGRD1Q6QNK2 874 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ZNF467Q7Z7K2 595 aaPredicted RBP16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ZNF410Q86VK4 478 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 THOC1Q96FV9 657 aaKnown RBP16.12■□□□□ 0.17
UPF3B-202ENST00000345865 MAML3Q96JK9 1138 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 PAFAH2Q99487 392 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 SLC4A5Q9BY07 1137 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 MAGEB5Q9BZ81 275 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 ZNF408Q9H9D4 720 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 NGRNQ9NPE2 291 aaKnown RBP16.12■□□□□ 0.17
UPF3B-202ENST00000345865 CHMP2BQ9UQN3 213 aa16.12■□□□□ 0.17
UPF3B-202ENST00000345865 HGSO14964 777 aaPredicted RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 GPR32O75388 356 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 NCALDP61601 193 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 ELF3P78545 371 aaPredicted RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 KCNJ11Q14654 390 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 DPY19L2Q6NUT2 758 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 TMEM110Q86TL2 294 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 ECHDC2Q86YB7 292 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 PDIK1LQ8N165 341 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 OR6J1Q8NGC5 347 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 PCDH19Q8TAB3 1148 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 CLEC4CQ8WTT0 213 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 FAM172AQ8WUF8 416 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 DCAKDQ8WVC6 231 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 BRI3BPQ8WY22 251 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 SNX27Q96L92 541 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 C12orf65Q9H3J6 166 aaKnown RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 CD248Q9HCU0 757 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 STRNO43815 780 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 STIP1P31948 543 aaKnown RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 ELK3P41970 407 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 GCLCP48506 637 aaPredicted RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 SLC6A3Q01959 620 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 BNIP1Q12981 228 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 SPARCL1Q14515 664 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 GPR142Q7Z601 462 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 DPP9Q86TI2 863 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 PARP9Q8IXQ6 854 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 SNRNP25Q9BV90 132 aaKnown RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 MIS12Q9H081 205 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 PCDH18Q9HCL0 1135 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 SENP1Q9P0U3 644 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 FETUBQ9UGM5 382 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 SMG5Q9UPR3 1016 aaKnown RBP16.11■□□□□ 0.17
UPF3B-202ENST00000345865 RALGAPA2Q2PPJ7 1873 aa16.11■□□□□ 0.17
UPF3B-202ENST00000345865 H7C0C1 242 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 DPYSL4O14531 572 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 PHBP35232 272 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 ATP5OP48047 213 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 MNAT1P51948 309 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 ATXN1P54253 815 aaKnown RBP16.1■□□□□ 0.17
UPF3B-202ENST00000345865 HDAC4P56524 1084 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 RNASELQ05823 741 aaKnown RBP16.1■□□□□ 0.17
UPF3B-202ENST00000345865 ACVR2BQ13705 512 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 HIC1Q14526 733 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 SOWAHAQ2M3V2 549 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 DCAF4L1Q3SXM0 396 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 PALM2Q8IXS6 379 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 CCDC63Q8NA47 563 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 GTF3C2Q8WUA4 911 aaPredicted RBP16.1■□□□□ 0.17
UPF3B-202ENST00000345865 OSMRQ99650 979 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 NXF3Q9H4D5 531 aaKnown RBP16.1■□□□□ 0.17
UPF3B-202ENST00000345865 FAM124BQ9H5Z6 455 aaPredicted RBP16.1■□□□□ 0.17
UPF3B-202ENST00000345865 PPCSQ9HAB8 311 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 SPON1Q9HCB6 807 aa16.1■□□□□ 0.17
UPF3B-202ENST00000345865 MORF4L1Q9UBU8 362 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms