RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MUL1Q969V5 352 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 HIST1H2AAQ96QV6 131 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 VN1R3Q9BXE9 311 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 PCDHAC1Q9H158 963 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 TOR3AQ9H497 397 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 VPS51Q9UID3 782 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 ZMYND8Q9ULU4 1186 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 EPN1Q9Y6I3 576 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 OR2W5A6NFC9 320 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 VWC2LB2RUY7 222 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 ADM5C9JUS6 153 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 M0R3H8 397 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 TCEA3O75764 348 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 RHOBTB3O94955 611 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 GLP2RO95838 553 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 PDHA1P08559 390 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 IL6RP08887 468 aaPredicted RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 DLDP09622 509 aaKnown RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 HGFP14210 728 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 CD19P15391 556 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 RBL1P28749 1068 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 GRIA3P42263 894 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 CLCN2P51788 898 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 TPTEP56180 551 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 NSUN2Q08J23 767 aaKnown RBP eCLIP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 GPS1Q13098 491 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 PUM3Q15397 648 aaKnown RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 PDCD2Q16342 344 aaPredicted RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 PRR16Q569H4 304 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 FAM83BQ5T0W9 1011 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 LAIR1Q6GTX8 287 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 ZNF627Q7L945 461 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 WDR53Q7Z5U6 358 aaPredicted RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 GGNQ86UU5 652 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 CAND1Q86VP6 1230 aaKnown RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 SMC5Q8IY18 1101 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 BEND2Q8NDZ0 799 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 MBD3L2Q8NHZ7 208 aaPredicted RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 RP9Q8TA86 221 aaKnown RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 ABHD5Q8WTS1 349 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 ARHGEF3Q9NR81 526 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 GABRQQ9UN88 632 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 DRG1Q9Y295 367 aaKnown RBP3.96□□□□□ -1.78
HMGB1-201ENST00000326004 HS3ST3A1Q9Y663 406 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 COL15A1P39059 1388 aa3.96□□□□□ -1.78
HMGB1-201ENST00000326004 ARID4BQ4LE39 1312 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 PLEKHD1A6NEE1 506 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 GCOM1H8Y6P7 765 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 FOXN1O15353 648 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 TJP3O95049 919 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 TTLL1O95922 423 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 FESP07332 822 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 NR2F6P10588 404 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ADRA1BP35368 520 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 GDF5P43026 501 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ZXDAP98168 799 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 FOXI1Q12951 378 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ATP1A4Q13733 1029 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 BLMHQ13867 455 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ZNF169Q14929 603 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 LY6KQ17RY6 165 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ZACNQ401N2 412 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 GORABQ5T7V8 394 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 RAP1GAP2Q684P5 730 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ABLIM2Q6H8Q1 611 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ANKRD16Q6P6B7 361 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 MTHFD1LQ6UB35 978 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 Q6ZPA2 131 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 USP49Q70CQ1 688 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 PEG10Q86TG7 708 aaKnown RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 XAGE5Q8WWM1 108 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 R3HDM4Q96D70 268 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 C18orf8Q96DM3 657 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 PDLIM2Q96JY6 352 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 ZBTB45Q96K62 511 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 DPCDQ9BVM2 203 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 MYH16Q9H6N6 1097 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 AS3MTQ9HBK9 375 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 HELLSQ9NRZ9 838 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 SERTAD4Q9NUC0 356 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 FOXJ2Q9P0K8 574 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 DKK3Q9UBP4 350 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 NKX1-2Q9UD57 310 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-201ENST00000326004 STEAP1Q9UHE8 339 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 PACSIN3Q9UKS6 424 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 RIMKLBQ9ULI2 386 aa3.95□□□□□ -1.78
HMGB1-201ENST00000326004 hCG_1642624A0A1W2PR95 340 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 A8MVJ9 347 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 AGPSO00116 658 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 SYT5O00445 386 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 CYR61O00622 381 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 VIPP01282 170 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 GCP02774 474 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 CSTBP04080 98 aaKnown RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 ERBB2P04626 1255 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 ARP10275 920 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 PECAM1P16284 738 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 NDUFB7P17568 137 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 TYRP1P17643 537 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 KRT4P19013 534 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms