RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SLC20A1Q8WUM9 679 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 PCDH9Q9HC56 1237 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 PIN4Q9Y237 131 aaKnown RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 MSH4O15457 936 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 PSMG1O95456 288 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CYP2C8P10632 490 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 KCNT1Q5JUK3 1230 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CACHD1Q5VU97 1274 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 HHIPL2Q6UWX4 724 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 C17orf75Q9HAS0 396 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 NINJ2Q9NZG7 142 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 TUBGCP4Q9UGJ1 667 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 C2CD2Q9Y426 696 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 PDZK1P1A8MUH7 402 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CSPG5O95196 566 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CPB1P15086 417 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 BAATQ14032 418 aaPredicted RBP17.91■□□□□ 0.46
SYNPO-201ENST00000307662 GIT2Q14161 759 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 TRIP4Q15650 581 aaPredicted RBP17.91■□□□□ 0.46
SYNPO-201ENST00000307662 C2CD6Q53TS8 623 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 TCHHL1Q5QJ38 904 aaPredicted RBP17.91■□□□□ 0.46
SYNPO-201ENST00000307662 AGAP11Q8TF27 550 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 TATDN2Q93075 761 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 FOPNLQ96NB1 174 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 RNPEPQ9H4A4 650 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 MYRFQ9Y2G1 1151 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 PIK3C2BO00750 1634 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 IQGAP1P46940 1657 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 C1orf232A0A0U1RR37 186 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 ATP6V1B2P21281 511 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 PPP4R4Q6NUP7 873 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 ZFP1Q6P2D0 407 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 APOPT1Q96IL0 206 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CNPY3Q9BT09 278 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 UBE2OQ9C0C9 1292 aaKnown RBP17.91■□□□□ 0.46
SYNPO-201ENST00000307662 UTP6Q9NYH9 597 aaKnown RBP17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CTNNAL1Q9UBT7 734 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 POLIQ9UNA4 740 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 DIP2AQ14689 1571 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 NR5A2O00482 541 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CD4P01730 458 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 FASP25445 335 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CDK16Q00536 496 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 HDDC2Q7Z4H3 204 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 CLVS1Q8IUQ0 354 aaPredicted RBP17.91■□□□□ 0.46
SYNPO-201ENST00000307662 RAB42Q8N4Z0 105 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 TCF7L2Q9NQB0 619 aa17.91■□□□□ 0.46
SYNPO-201ENST00000307662 MEI4A8MW99 385 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 CHRM3P20309 590 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MUTP22033 750 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 GLRBP48167 497 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 PPP3CCP48454 512 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 SLC1A6P48664 564 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 C21orf59P57076 290 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 BMPR2Q13873 1038 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 FRMPD1Q5SYB0 1578 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MSL3Q8N5Y2 521 aaKnown RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 GJD4Q96KN9 370 aaPredicted RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MRPS26Q9BYN8 205 aaKnown RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ASNA1O43681 348 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 NBNO60934 754 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 NR3C2P08235 984 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MAPRE1Q15691 268 aaKnown RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ELMOD1Q8N336 334 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 RSPH1Q8WYR4 309 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ZNF75CPQ92670 426 aaPredicted RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 APOL5Q9BWW9 433 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 LINC00854A0A1B0GVQ3 168 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ENTPD3O75355 529 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 FBXW4P57775 412 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 STRA8Q7Z7C7 330 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ZCCHC7Q8N3Z6 543 aaKnown RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 OR6Y1Q8NGX8 325 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MAGED4Q96JG8 741 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 DCUN1D5Q9BTE7 237 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ZNF518BQ9C0D4 1074 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MCM8Q9UJA3 840 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 TBC1D12O60347 775 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 TFRCP02786 760 aaKnown RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 GEMP55040 296 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 CDC42EP1Q00587 391 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 CLEC16AQ2KHT3 1053 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 ARHGAP17Q68EM7 881 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 OR8H2Q8N162 312 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 SEPT1Q8WYJ6 367 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 IARS2Q9NSE4 1012 aaKnown RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 NCKIPSDQ9NZQ3 722 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 VWA5AO00534 786 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 DNALI1O14645 258 aaPredicted RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 SERPINE1P05121 402 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 TPP2P29144 1249 aaPredicted RBP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 NME5P56597 212 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 MEA1Q16626 185 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 CBWD2Q8IUF1 395 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 THAP1Q9NVV9 213 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.9■□□□□ 0.46
SYNPO-201ENST00000307662 SELENONQ9NZV5 590 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 VPS9D1Q9Y2B5 631 aa17.9■□□□□ 0.46
SYNPO-201ENST00000307662 XRCC4Q13426 336 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 DCTN2Q13561 401 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms