RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 DNAJC16Q9Y2G8 782 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 FKBP9O95302 570 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 CYP2B6P20813 491 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 BMP6P22004 513 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 SPDYCQ5MJ68 293 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 FKBP9P1Q75LS8 142 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 NIPA1Q7RTP0 329 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 KCNK18Q7Z418 384 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 UNC45BQ8IWX7 931 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 VGLL2Q8N8G2 317 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 STKLD1Q8NE28 680 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 ZKSCAN4Q969J2 545 aaPredicted RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 MTMR9Q96QG7 549 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 MUC3BQ9H195 1237 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 KCTD10Q9H3F6 313 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 IL1RL2Q9HB29 575 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 ZNF229Q9UJW7 825 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 UBR1Q8IWV7 1749 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 EVPLLA8MZ36 301 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 STX7O15400 261 aaKnown RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 SKAP2O75563 359 aaPredicted RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 SYF2O95926 243 aaKnown RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 POU4F1Q01851 419 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 MGAT5BQ3V5L5 792 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 SEL1L3Q68CR1 1132 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 FAM131BQ86XD5 332 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 TBCBQ99426 244 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 GPR63Q9BZJ6 419 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 UBE2OQ9C0C9 1292 aaKnown RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 KCNQ5Q9NR82 932 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 TAGLN3Q9UI15 199 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 FKBP6O75344 327 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 ALBP02768 609 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 DPEP1P16444 411 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 VCAM1P19320 739 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 TRPC1P48995 793 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 COL9A3Q14050 684 aaPredicted RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 ZCWPW2Q504Y3 356 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 TEKT4Q8WW24 435 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 SEPT5Q99719 369 aaPredicted RBP11.12□□□□□ -0.63
CD44-201ENST00000263398 TMEM120AQ9BXJ8 343 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 CAAP1Q9H8G2 361 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 ACOT9Q9Y305 439 aa11.12□□□□□ -0.63
CD44-201ENST00000263398 B3GAT3O94766 335 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ALDH1A1P00352 501 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 CPA3P15088 417 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ATP6V1B1P15313 513 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 AMHR2Q16671 573 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 TRMT5Q32P41 509 aaKnown RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 GNASQ5JWF2 1037 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ARHGEF19Q8IW93 802 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 RAB42Q8N4Z0 105 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 VPS37AQ8NEZ2 397 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 TUBGCP3Q96CW5 907 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 KLK14Q9P0G3 267 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ADGRA2Q96PE1 1338 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 VIL1P09327 827 aaKnown RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 MGAT5Q09328 741 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 MPP3Q13368 585 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ZNF268Q14587 947 aaPredicted RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 BNC2Q6ZN30 1099 aaPredicted RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 FAM83AQ86UY5 434 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ATP6V0D2Q8N8Y2 350 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ANKRD27Q96NW4 1050 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 PIDD1Q9HB75 910 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 INTS13Q9NVM9 706 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 CCL15-CCL14A0A0B4J2E2 113 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 C5orf58C9J3I9 102 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 XPO1O14980 1071 aaKnown RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 PRPF4O43172 522 aaKnown RBP eCLIP11.11□□□□□ -0.63
CD44-201ENST00000263398 TPST1O60507 370 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 TGFB3P10600 412 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 CETPP11597 493 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 BGNP21810 368 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ETFBP38117 255 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 HARS2P49590 506 aaKnown RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 PLOD1Q02809 727 aaPredicted RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 CCL15Q16663 113 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 C10orf120Q5SQS8 335 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 TTC33Q6PID6 262 aaPredicted RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 METTL7BQ6UX53 244 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ADCK1Q86TW2 530 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 TSEN2Q8NCE0 465 aaKnown RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 SLC16A10Q8TF71 515 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 JADE3Q92613 823 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 INPP5DQ92835 1189 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ECSITQ9BQ95 431 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ZNF556Q9HAH1 456 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 CHST12Q9NRB3 414 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 NCKIPSDQ9NZQ3 722 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 M0R3G1 203 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ARHGEF9O43307 516 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 DAB1O75553 588 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ODC1P11926 461 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 PECAM1P16284 738 aaPredicted RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 OR1G1P47890 313 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 MMP14P50281 582 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 IFI35P80217 286 aaPredicted RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 SYTL3Q4VX76 610 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 ZRANB3Q5FWF4 1079 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms