RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CAMKK2Q96RR4 588 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ATP10DQ9P241 1426 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MFHAS1Q9Y4C4 1052 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PLEKHG2Q9H7P9 1386 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L10C9JJH3 530 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AREL1O15033 823 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 IGHEP01854 428 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 HSPD1P10809 573 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 HOXB6P17509 224 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PSEN2P49810 448 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PLOD1Q02809 727 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 BARGINQ6ZT62 677 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC8DQ7L1W4 858 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 FOXP4Q8IVH2 680 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL41Q8IXM3 137 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LZTR1Q8N653 840 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CKAP2Q8WWK9 683 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DNAJC9Q8WXX5 260 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TMX3Q96JJ7 454 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 BOLA2Q9H3K6 86 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 FAM124BQ9H5Z6 455 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AVENQ9NQS1 362 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SEPT9Q9UHD8 586 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ENOPH1Q9UHY7 261 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RWDD2AQ9UIY3 292 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PSME2Q9UL46 239 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TBC1D30Q9Y2I9 924 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 A0A0G2JND7 137 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L5A8MUK1 530 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LAD1O00515 517 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TCP1P17987 556 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TGFBR2P37173 567 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CDKL1Q00532 357 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PLP2Q04941 152 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PAK1Q13153 545 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CCINQ13939 588 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GALNT3Q14435 633 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KPNB1Q14974 876 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AGMOQ6ZNB7 445 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 C6orf120Q7Z4R8 191 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PRUNE1Q86TP1 453 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 HERC6Q8IVU3 1022 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MYCT1Q8N699 235 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ALG2Q9H553 416 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ADA2Q9NZK5 511 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGAP20Q9P2F6 1191 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MYO1AQ9UBC5 1043 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LRRIQ1Q96JM4 1722 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SYNMO15061 1565 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AGRNO00468 2067 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC195A0A1B0GUA6 201 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NRP2O60462 931 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CBFA2T3O75081 653 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CRYBA1P05813 215 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 COX7A2P14406 83 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEA2P43356 314 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 COX10Q12887 443 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DNAJC3Q13217 504 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TKFCQ3LXA3 575 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NAIF1Q69YI7 327 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RASSF3Q86WH2 238 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KLHL23Q8NBE8 558 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 FBXW5Q969U6 566 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ASPNQ9BXN1 380 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 VPS33BQ9H267 617 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TIGARQ9NQ88 270 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DNAAF2Q9NVR5 837 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ADAM30Q9UKF2 790 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 HPSEQ9Y251 543 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MTA2O94776 668 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CLIC3O95833 236 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 HNF1AP20823 631 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 GGCXP38435 758 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PHKA2P46019 1235 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RPL10AP62906 217 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 LGALS3BPQ08380 585 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 STILQ15468 1287 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF394Q53GI3 561 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MIIPQ5JXC2 388 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CYP4F22Q6NT55 531 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SLC2A7Q6PXP3 512 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SPATA21Q7Z572 469 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TBC1D16Q8TBP0 767 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ANKRD49Q8WVL7 239 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM125Q96AQ2 219 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZHX1-C8orf76Q96EF9 292 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CEP95Q96GE4 821 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ITCHQ96J02 903 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 APOL4Q9BPW4 351 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 THUMPD3Q9BV44 507 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SMURF2Q9HAU4 748 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 C8orf4Q9NR00 106 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SAMD9Q5K651 1589 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 LRIT2A6NDA9 550 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PPP1R3GB7ZBB8 358 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RASA4BC9J798 803 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 H3BNH8 94 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 STMND1H3BQB6 276 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 K7ERI5 159 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MYO1FO00160 1098 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms