RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ZBED6P86452 979 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 GCNT1Q02742 428 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 IFRD2Q12894 506 aaPredicted RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 ARHGAP15Q53QZ3 475 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 PPP1R26Q5T8A7 1209 aaPredicted RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 PHLDB3Q6NSJ2 640 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 DENND5BQ6ZUT9 1274 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 UBALD2Q8IYN6 164 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 UBR7Q8N806 425 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 SLC4A11Q8NBS3 891 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 CCDC112Q8NEF3 446 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 TRMT2BQ96GJ1 504 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 CEP295NLQ96MC4 621 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 ASB16Q96NS5 453 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 DNAJC7Q99615 494 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 HNRNPABQ99729 332 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 KXD1Q9BQD3 176 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 LSM14BQ9BX40 385 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 NAA15Q9BXJ9 866 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 PLA2G2FQ9BZM2 168 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 GPR88Q9GZN0 384 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 GANQ9H2C0 597 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 ZFP14Q9HCL3 533 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 DMAP1Q9NPF5 467 aaPredicted RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 UXTQ9UBK9 157 aaPredicted RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 DUSP12Q9UNI6 340 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 LUC7L2Q9Y383 392 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 NRDCO43847 1150 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 MFAP3LO75121 409 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 TADA3O75528 432 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 FAM200BP0CF97 657 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 SLC9A1P19634 815 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 ACO1P21399 889 aaKnown RBP10.43□□□□□ -0.74
CLN3-261ENST00000637686 FCARP24071 287 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 VIPR2P41587 438 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 CDK17Q00537 523 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 GJB7Q6PEY0 223 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 TMEM270Q6UE05 265 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 TRIM67Q6ZTA4 783 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 NUP93Q8N1F7 819 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 MAB21L3Q8N8X9 362 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 TC2NQ8N9U0 490 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 ZMIZ2Q8NF64 920 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 OR8K1Q8NGG5 319 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 SCAMP5Q8TAC9 235 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 SMARCD2Q92925 531 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 ELSPBP1Q96BH3 223 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 PCMTD1Q96MG8 357 aaPredicted RBP10.43□□□□□ -0.74
CLN3-261ENST00000637686 KREMEN1Q96MU8 473 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 SMOQ99835 787 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 SLC46A2Q9BY10 475 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 TASP1Q9H6P5 420 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 CSNK1G1Q9HCP0 422 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 SIX2Q9NPC8 291 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 UBE2TQ9NPD8 197 aaPredicted RBP10.43□□□□□ -0.74
CLN3-261ENST00000637686 C11orf16Q9NQ32 467 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 PCDHB4Q9Y5E5 795 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 CUL9Q8IWT3 2517 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 GREB1Q4ZG55 1949 aa10.43□□□□□ -0.74
CLN3-261ENST00000637686 TMEM221A6NGB7 291 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 RNF225M0QZC1 329 aaPredicted RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 M0R296 226 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 TNFRSF10BO14763 440 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 ECI2O75521 394 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 PTMAP06454 111 aaKnown RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 CFHP08603 1231 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 CCDC172P0C7W6 258 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 SRFP11831 508 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 CD19P15391 556 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 DDX6P26196 483 aaKnown RBP eCLIP10.42□□□□□ -0.74
CLN3-261ENST00000637686 YWHAQP27348 245 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 KRT9P35527 623 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 DEKP35659 375 aaKnown RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 SLC5A3P53794 718 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 JAM2P57087 298 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 GPC5P78333 572 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 APBA1Q02410 837 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 SIGLEC14Q08ET2 396 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 MEA1Q16626 185 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 TSR1Q2NL82 804 aaKnown RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 TMEM31Q5JXX7 168 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 ARHGAP17Q68EM7 881 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 TXNDC8Q6A555 127 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 CLEC20AQ6ZU45 233 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 CCDC186Q7Z3E2 898 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 CACNA2D4Q7Z3S7 1137 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 ARID3BQ8IVW6 561 aaPredicted RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 SPC24Q8NBT2 197 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 BAP1Q92560 729 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 MRPS31Q92665 395 aaKnown RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 FBXO32Q969P5 355 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 TTLL2Q9BWV7 592 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 C1QTNF1Q9BXJ1 281 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 DUSP16Q9BY84 665 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 STK33Q9BYT3 514 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 SMG9Q9H0W8 520 aaKnown RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 TRPV4Q9HBA0 871 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 TRPC7Q9HCX4 862 aa10.42□□□□□ -0.74
CLN3-261ENST00000637686 FAM207AQ9NSI2 230 aaPredicted RBP10.42□□□□□ -0.74
CLN3-261ENST00000637686 EHD2Q9NZN4 543 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms