RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 MED10Q9BTT4 135 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 B3GNT5Q9BYG0 378 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 FRMD8P1Q9BZ68 369 aaPredicted RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 NRDE2Q9H7Z3 1164 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 LRRC4Q9HBW1 653 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 STIM2Q9P246 746 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 H7C4K7 107 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 MDM4O15151 490 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 AP1G2O75843 785 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 DGKIO75912 1065 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 ZRANB2O95218 330 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLN3-248ENST00000636355 ALDH2P05091 517 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 ITGB1P05556 798 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 PDGFRAP16234 1089 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 FGFR3P22607 806 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 ACAT1P24752 427 aaKnown RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 GBP1P32455 592 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 MAGEA11P43364 429 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 AIF1P55008 147 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 OGDHQ02218 1023 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 ADIGQ0VDE8 80 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 MRPL58Q14197 206 aaKnown RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 TFDP3Q5H9I0 405 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 KIAA0319Q5VV43 1072 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 MFSD5Q6N075 450 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 LLGL2Q6P1M3 1020 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 CC2D1AQ6P1N0 951 aaPredicted RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 ANKS3Q6ZW76 656 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 STRADAQ7RTN6 431 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 GPR65Q8IYL9 337 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 CMTR2Q8IYT2 770 aaKnown RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 JOSD2Q8TAC2 188 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 C11orf84Q9BUA3 381 aaPredicted RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 ZCWPW1Q9H0M4 648 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 PRDM16Q9HAZ2 1276 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 RC3H2Q9HBD1 1191 aaKnown RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 MARCH5Q9NX47 278 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 CACNG4Q9UBN1 327 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 TJP2Q9UDY2 1190 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 DNAJB4Q9UDY4 337 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLN3-248ENST00000636355 PCYOX1Q9UHG3 505 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 STAP1Q9ULZ2 295 aa11.09□□□□□ -0.63
CLN3-248ENST00000636355 V9GYY5 206 aaPredicted RBP11.09□□□□□ -0.63
CLN3-248ENST00000636355 GREB1Q4ZG55 1949 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 MYBPHLA2RUH7 354 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 FAM187AA6NFU0 413 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 TBKBP1A7MCY6 615 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 F8VP50 259 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 TULP2O00295 520 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 NRP1O14786 923 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 TRIM66O15016 1216 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 HCRTO43612 131 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 ATP2C2O75185 946 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 TADA2AO75478 443 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 KRT1P04264 644 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 PYGMP11217 842 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 PPM1AP35813 382 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 FLT3P36888 993 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 MATKP42679 507 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 SLC11A1P49279 550 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 RGS7P49802 495 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 TAS2R40P59535 323 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 MRPS5P82675 430 aaKnown RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 KLF1Q13351 362 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 SMC1AQ14683 1233 aaKnown RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 TAZQ16635 292 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 PTPROQ16827 1216 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 TCTN1Q2MV58 587 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 ODF2Q5BJF6 829 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 VARS2Q5ST30 1063 aaKnown RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 FUT10Q6P4F1 479 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 DRICH1Q6PGQ1 229 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 SYDE1Q6ZW31 735 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 RNF168Q8IYW5 571 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 OR10T2Q8NGX3 314 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 HASPINQ8TF76 798 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 GRK7Q8WTQ7 553 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 CENPIQ92674 756 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 TOP1MTQ969P6 601 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 SLITRK1Q96PX8 696 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 SLC2A13Q96QE2 648 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 DDX23Q9BUQ8 820 aaKnown RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 RAB17Q9H0T7 212 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 LRRC19Q9H756 370 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 FEZ2Q9UHY8 353 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 RASAL2Q9UJF2 1139 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 FAN1Q9Y2M0 1017 aa11.08□□□□□ -0.64
CLN3-248ENST00000636355 PRG3Q9Y2Y8 225 aaPredicted RBP11.08□□□□□ -0.64
CLN3-248ENST00000636355 ZNF638Q14966 1978 aaKnown RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 HHLA1C9JL84 531 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 ATP8B1O43520 1251 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 PRPSAP2O60256 369 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 GABBR2O75899 941 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 TJP3O95049 919 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 EFEMP2O95967 443 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 GALTP07902 379 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 RHOXF2BP0C7M4 288 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 RAG1P15918 1043 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 LAG3P18627 525 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms