RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CDK11BP21127 795 aaKnown RBP21.9■■□□□ 1.1
CLN3-240ENST00000631023 CELF5Q8N6W0 485 aaKnown RBP21.9■■□□□ 1.1
CLN3-240ENST00000631023 ANKRD52Q8NB46 1076 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 SCAMP5Q8TAC9 235 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 OVCA2Q8WZ82 227 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 KREMEN1Q96MU8 473 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 TRPC7Q9HCX4 862 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 C11orf16Q9NQ32 467 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 IL37Q9NZH6 218 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 HESX1Q9UBX0 185 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 HEPACAM2A8MVW5 462 aa21.89■■□□□ 1.09
CLN3-240ENST00000631023 BMP8AQ7Z5Y6 402 aa21.89■■□□□ 1.09
CLN3-240ENST00000631023 YAF2Q8IY57 180 aa21.89■■□□□ 1.09
CLN3-240ENST00000631023 ASIC4Q96FT7 647 aa21.89■■□□□ 1.09
CLN3-240ENST00000631023 BPIFA3Q9BQP9 254 aa21.89■■□□□ 1.09
CLN3-240ENST00000631023 TAB2Q9NYJ8 693 aa21.89■■□□□ 1.09
CLN3-240ENST00000631023 ZNF840PA6NDX5 716 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 ABL1P00519 1130 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 USP17L7P0C7H9 530 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 KRT5P13647 590 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 VITQ6UXI7 678 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 GPIHBP1Q8IV16 184 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 RBBP8NLQ8NC74 664 aaPredicted RBP21.88■■□□□ 1.09
CLN3-240ENST00000631023 PBXIP1Q96AQ6 731 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 UBXN6Q9BZV1 441 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 BRD9Q9H8M2 597 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 KIF9Q9HAQ2 790 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 TDP1Q9NUW8 608 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 CNTN6Q9UQ52 1028 aa21.88■■□□□ 1.09
CLN3-240ENST00000631023 NCANO14594 1321 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 SMTNL1A8MU46 457 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 RNF225M0QZC1 329 aaPredicted RBP21.87■■□□□ 1.09
CLN3-240ENST00000631023 CKMP06732 381 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 HDCP19113 662 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 GRM2Q14416 872 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 KRT31Q15323 416 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 STILQ15468 1287 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 SMYD5Q6GMV2 418 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 AOPEPQ8N6M6 819 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 IRF7Q92985 503 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 LRFN3Q9BTN0 628 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 VPS16Q9H269 839 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 TSPAN16Q9UKR8 245 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 TICRRQ7Z2Z1 1910 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 F5P12259 2224 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 SYCE3A1L190 88 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 FAM92AA1XBS5 289 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 ZNF263O14978 683 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 BCAT1P54687 386 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 ZNF268Q14587 947 aaPredicted RBP21.87■■□□□ 1.09
CLN3-240ENST00000631023 GOLGA7BQ2TAP0 167 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 FKBP15Q5T1M5 1219 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 MFSD1Q9H3U5 465 aa21.87■■□□□ 1.09
CLN3-240ENST00000631023 THG1LQ9NWX6 298 aaKnown RBP21.87■■□□□ 1.09
CLN3-240ENST00000631023 CHORDC1Q9UHD1 332 aaPredicted RBP21.87■■□□□ 1.09
CLN3-240ENST00000631023 C2orf78A6NCI8 922 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 HHLA1C9JL84 531 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 O00370 1275 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 PRAMEF12O95522 483 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 GDI1P31150 447 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 ZNF165P49910 485 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 ZNF132P52740 706 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 FCHO2Q0JRZ9 810 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 NCAPHQ15003 741 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 CNGA2Q16280 664 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 ARHGAP44Q17R89 818 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 LCLAT1Q6UWP7 414 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 HFE2Q6ZVN8 426 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 SIX5Q8N196 739 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 ARL14EPQ8N8R7 260 aaPredicted RBP21.86■■□□□ 1.09
CLN3-240ENST00000631023 BPIFB1Q8TDL5 484 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 USP13Q92995 863 aaPredicted RBP21.86■■□□□ 1.09
CLN3-240ENST00000631023 RSPRY1Q96DX4 576 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 CYP2S1Q96SQ9 504 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 SMG9Q9H0W8 520 aaKnown RBP21.86■■□□□ 1.09
CLN3-240ENST00000631023 TLR8Q9NR97 1041 aaKnown RBP21.86■■□□□ 1.09
CLN3-240ENST00000631023 SCML2Q9UQR0 700 aa21.86■■□□□ 1.09
CLN3-240ENST00000631023 BST2Q10589 180 aaKnown RBP21.85■■□□□ 1.09
CLN3-240ENST00000631023 ARHGAP29Q52LW3 1261 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 SNX30Q5VWJ9 437 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 GJB7Q6PEY0 223 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 TTC30AQ86WT1 665 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 DNASE1L2Q92874 299 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 SHDQ96IW2 340 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 FUCA2Q9BTY2 467 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 LIMA1Q9UHB6 759 aaKnown RBP21.85■■□□□ 1.09
CLN3-240ENST00000631023 DNAJC12Q9UKB3 198 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 CA14Q9ULX7 337 aa21.85■■□□□ 1.09
CLN3-240ENST00000631023 KIF26AQ9ULI4 1882 aaPredicted RBP21.84■■□□□ 1.09
CLN3-240ENST00000631023 CHADO15335 359 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 ZNF18P17022 549 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 USP8P40818 1118 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 KIF11P52732 1056 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 KCNMA1Q12791 1236 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 HECTD3Q5T447 861 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 GPRIN1Q7Z2K8 1008 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 PIGZQ86VD9 579 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 SUGP1Q8IWZ8 645 aaKnown RBP21.84■■□□□ 1.09
CLN3-240ENST00000631023 TFAP2BQ92481 460 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 SIX2Q9NPC8 291 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms