RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PTMAP06454 111 aaKnown RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 KRT5P13647 590 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 FERP16591 822 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 CHRNB2P17787 502 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 LAG3P18627 525 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 TYMPP19971 482 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 SPINK2P20155 84 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 USP8P40818 1118 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 PRKCIP41743 596 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 NDST1P52848 882 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 YWHAEP62258 255 aaKnown RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 CCZ1BP86790 482 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 CCZ1P86791 482 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 CDK17Q00537 523 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ORC1Q13415 861 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ASIC2Q16515 512 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ASTE1Q2TB18 679 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF394Q53GI3 561 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 TENM4Q6N022 2769 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF571Q7Z3V5 609 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 NOP9Q86U38 636 aaKnown RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 PDZD3Q86UT5 571 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 SLC47A2Q86VL8 602 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 RNF168Q8IYW5 571 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 WDFY3Q8IZQ1 3526 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 SLC39A11Q8N1S5 342 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 RBBP8NLQ8NC74 664 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ADAM32Q8TC27 787 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 GATA6Q92908 595 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 LPIN3Q9BQK8 851 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 ZSWIM1Q9BR11 485 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 SYT11Q9BT88 431 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 HAUS4Q9H6D7 363 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 RXFP3Q9NSD7 469 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 PCDHB8Q9UN66 801 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 TRAPPC3O43617 180 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 SERPING1P05155 500 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 PAEPP09466 180 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 PDGFRBP09619 1106 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 ODC1P11926 461 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 CYP11B1P15538 503 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 EPCAMP16422 314 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 FGFR3P22607 806 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 TKTP29401 623 aaKnown RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 GBP2P32456 591 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 CA8P35219 290 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 MAGEA9P43362 315 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 PTK2Q05397 1052 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 FOXC1Q12948 553 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 MAPK8IP2Q13387 824 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 MRPL58Q14197 206 aaKnown RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 TSR1Q2NL82 804 aaKnown RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 AASDHQ4L235 1098 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 FAM171A1Q5VUB5 890 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 FUT10Q6P4F1 479 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 UNC93AQ86WB7 457 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 ADGRF2Q8IZF7 708 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 CRYBG2Q8N1P7 616 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 TMEM86AQ8N2M4 240 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 TTC39CQ8N584 583 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 OR6B3Q8NGW1 331 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 SLC20A1Q8WUM9 679 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 TFAP2BQ92481 460 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 TMEM176AQ96HP8 235 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 B3GALT6Q96L58 329 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 ZNF558Q96NG5 402 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 BAG1Q99933 345 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 SNX25Q9H3E2 840 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 DPEP3Q9H4B8 488 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 SLC2A4RGQ9NR83 387 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 SPG21Q9NZD8 308 aa10.02□□□□□ -0.81
TRIM28-208ENST00000597172 NOCTQ9UK39 431 aaKnown RBP10.02□□□□□ -0.81
TRIM28-208ENST00000597172 PATJQ8NI35 1801 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 SOWAHDA6NJG2 315 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 FAM170BA6NMN3 283 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 A8MXQ7 604 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 SYN3O14994 580 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 ATP2C2O75185 946 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 OAZ2O95190 189 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 CXCL14O95715 111 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 ACAT1P24752 427 aaKnown RBP10.01□□□□□ -0.81
TRIM28-208ENST00000597172 EIF4A3P38919 411 aaKnown RBP10.01□□□□□ -0.81
TRIM28-208ENST00000597172 LHX1P48742 406 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 BPIFB4P59827 614 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 KLHL30Q0D2K2 578 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 BMS1Q14692 1282 aaKnown RBP10.01□□□□□ -0.81
TRIM28-208ENST00000597172 MTF1Q14872 753 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 UBXN2BQ14CS0 331 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 PSAPL1Q6NUJ1 521 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 C19orf48Q6RUI8 117 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 CYP26C1Q6V0L0 522 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 RAD9BQ6WBX8 426 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 ACOT1Q86TX2 421 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 TMTC1Q8IUR5 882 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 C12orf29Q8N999 325 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 SLC30A5Q8TAD4 765 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 SPATA18Q8TC71 538 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 EPS8L1Q8TE68 723 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 ZNF606Q8WXB4 792 aa10.01□□□□□ -0.81
TRIM28-208ENST00000597172 HEXIM2Q96MH2 286 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms