RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 KINO60870 393 aaKnown RBP13.86□□□□□ -0.19
LIG1-212ENST00000596549 HDCP19113 662 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 DMWDQ09019 674 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 PDGFRLQ15198 375 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 EML3Q32P44 896 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 TMEM196Q5HYL7 178 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 C12orf29Q8N999 325 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 TTC16Q8NEE8 873 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 SCAMP5Q8TAC9 235 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 SLC2A14Q8TDB8 520 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 EZH1Q92800 747 aaPredicted RBP13.86□□□□□ -0.19
LIG1-212ENST00000596549 TNIP3Q96KP6 325 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 GSDMAQ96QA5 445 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 SMOQ99835 787 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 RNF38Q9H0F5 515 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 TMEM8AQ9HCN3 771 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 FAM49BQ9NUQ9 324 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 RMND1Q9NWS8 449 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 ZSCAN32Q9NX65 697 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 TRPM5Q9NZQ8 1165 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 PCDHA5Q9Y5H7 936 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 ATP8B3O60423 1300 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 LEFTY2O00292 366 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 AP1G2O75843 785 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 PAPSS2O95340 614 aaPredicted RBP13.85□□□□□ -0.19
LIG1-212ENST00000596549 KRT13P13646 458 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 P4HA1P13674 534 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 PFKLP17858 780 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 RPL13P26373 211 aaKnown RBP13.85□□□□□ -0.19
LIG1-212ENST00000596549 GJA4P35212 333 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 SLC7A9P82251 487 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 DGKKQ5KSL6 1271 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 CC2D1AQ6P1N0 951 aaPredicted RBP13.85□□□□□ -0.19
LIG1-212ENST00000596549 GPRIN1Q7Z2K8 1008 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 UNC93AQ86WB7 457 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 NUP93Q8N1F7 819 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 CRYBG2Q8N1P7 616 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 SPEM1Q8N4L4 309 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 WHAMMQ8TF30 809 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 SEMA4DQ92854 862 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 CCDC34Q96HJ3 373 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 ZFRQ96KR1 1074 aaKnown RBP13.85□□□□□ -0.19
LIG1-212ENST00000596549 TIGD1Q96MW7 591 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 MED10Q9BTT4 135 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 NIF3L1Q9GZT8 377 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 EPC1Q9H2F5 836 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 ECT2Q9H8V3 914 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 FBRSL1Q9HCM7 1045 aaKnown RBP13.85□□□□□ -0.19
LIG1-212ENST00000596549 CSNK1G1Q9HCP0 422 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 DUS2Q9NX74 493 aaKnown RBP13.85□□□□□ -0.19
LIG1-212ENST00000596549 IL37Q9NZH6 218 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 EHD2Q9NZN4 543 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 CPQQ9Y646 472 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 DCHS1Q96JQ0 3298 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 OTOGLQ3ZCN5 2332 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 FAM186AA6NE01 2351 aa13.85□□□□□ -0.19
LIG1-212ENST00000596549 FAM92AA1XBS5 289 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 GOLGA6L4A6NEF3 574 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 TRDMT1O14717 391 aaKnown RBP13.84□□□□□ -0.19
LIG1-212ENST00000596549 SCAMP3O14828 347 aaKnown RBP13.84□□□□□ -0.19
LIG1-212ENST00000596549 CILPO75339 1184 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 EGFP01133 1207 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 YWHAQP27348 245 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 PPP3CCP48454 512 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 IFNAR2P48551 515 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 PGFP49763 221 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 MXI1P50539 228 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 PDE6CP51160 858 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 GAB4Q2WGN9 574 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 CBWD6Q4V339 395 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 CBWD3Q5JTY5 395 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 CBWD5Q5RIA9 395 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 KRT39Q6A163 491 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 ANKRD40Q6AI12 368 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 CLEC20AQ6ZU45 233 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 CPA6Q8N4T0 437 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 ATP2A3Q93084 1043 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 SMARCE1Q969G3 411 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 FBXO32Q969P5 355 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 SLITRK1Q96PX8 696 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 ARID3AQ99856 593 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 IMPG2Q9BZV3 1241 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 SMPD4Q9NXE4 827 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 GMIPQ9P107 970 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 SMG5Q9UPR3 1016 aaKnown RBP13.84□□□□□ -0.19
LIG1-212ENST00000596549 FRYLO94915 3013 aa13.84□□□□□ -0.19
LIG1-212ENST00000596549 HHLA1C9JL84 531 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 SLC16A3O15427 465 aaKnown RBP13.83□□□□□ -0.2
LIG1-212ENST00000596549 COCHO43405 550 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 GADD45BO75293 160 aaPredicted RBP13.83□□□□□ -0.2
LIG1-212ENST00000596549 RTN3O95197 1032 aaPredicted RBP13.83□□□□□ -0.2
LIG1-212ENST00000596549 ZDHHC11BP0C7U3 371 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 EPB41P11171 864 aaKnown RBP13.83□□□□□ -0.2
LIG1-212ENST00000596549 CD44P16070 742 aaKnown RBP13.83□□□□□ -0.2
LIG1-212ENST00000596549 CD58P19256 250 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 ADORA2BP29275 332 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 GTF2H1P32780 548 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 CXCL12P48061 93 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 MAP3K7CLP57077 242 aa13.83□□□□□ -0.2
LIG1-212ENST00000596549 DCLK2Q8N568 766 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms