RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NELFBQ8WX92 580 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 RUBCNQ92622 972 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 SLC35C1Q96A29 364 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 ZFYVE19Q96K21 471 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CEP63Q96MT8 703 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 MED10Q9BTT4 135 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 DMAP1Q9NPF5 467 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CTNND2Q9UQB3 1225 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 BICDL2A1A5D9 508 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 MAN2B1O00754 1011 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 CILPO75339 1184 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 CKMP06732 381 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 CD58P19256 250 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 TRIM21P19474 475 aaKnown RBP16.03■□□□□ 0.16
TRIM28-205ENST00000595028 USP4Q13107 963 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 TRIML1Q8N9V2 468 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 RIN3Q8TB24 985 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 SLC2A14Q8TDB8 520 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 MSANTD3Q96H12 275 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 FAXDC2Q96IV6 333 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 SLC22A12Q96S37 553 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 DUSP9Q99956 384 aaKnown RBP16.03■□□□□ 0.16
TRIM28-205ENST00000595028 NT5C1AQ9BXI3 368 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 METTL14Q9HCE5 456 aaKnown RBP16.03■□□□□ 0.16
TRIM28-205ENST00000595028 FAM49BQ9NUQ9 324 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 TDP1Q9NUW8 608 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 RAB20Q9NX57 234 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 TRPM5Q9NZQ8 1165 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 GCNT4Q9P109 453 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 MRPS17Q9Y2R5 130 aaKnown RBP16.03■□□□□ 0.16
TRIM28-205ENST00000595028 COQ4Q9Y3A0 265 aa16.03■□□□□ 0.16
TRIM28-205ENST00000595028 MTF2Q9Y483 593 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-205ENST00000595028 C2orf78A6NCI8 922 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 FAM170BA6NMN3 283 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 AP1G2O75843 785 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 RTN3O95197 1032 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-205ENST00000595028 USP17L7P0C7H9 530 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 PFKLP17858 780 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 MAGEA9P43362 315 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 PDE6CP51160 858 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 MLLT6P55198 1093 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-205ENST00000595028 IFRD2Q12894 506 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-205ENST00000595028 PAK1Q13153 545 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 CAMK4Q16566 473 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 CCDC40Q4G0X9 1142 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 NUP93Q8N1F7 819 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 C12orf29Q8N999 325 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 WHAMMQ8TF30 809 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 SLITRK1Q96PX8 696 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 KCNK16Q96T55 309 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 NELL2Q99435 816 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 THG1LQ9NWX6 298 aaKnown RBP16.02■□□□□ 0.16
TRIM28-205ENST00000595028 KIAA1468Q9P260 1216 aa16.02■□□□□ 0.16
TRIM28-205ENST00000595028 ZNF840PA6NDX5 716 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ADORA2BP29275 332 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 SOX9P48436 509 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 PPP3CCP48454 512 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 SLC5A3P53794 718 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 TNK2Q07912 1038 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 TAF10Q12962 218 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 MTF1Q14872 753 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ZNF77Q15935 545 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ST3GAL2Q16842 350 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 WDR44Q5JSH3 913 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 C1orf228Q6PIY5 440 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 FILIP1Q7Z7B0 1213 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ZNF687Q8N1G0 1237 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 TTC39CQ8N584 583 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ARL14EPQ8N8R7 260 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ZMIZ2Q8NF64 920 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 FBXO32Q969P5 355 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 CLDN23Q96B33 292 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 SMOQ99835 787 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ARID3AQ99856 593 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 FAM83CQ9BQN1 747 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 FAM124BQ9H5Z6 455 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-205ENST00000595028 C8orf33Q9H7E9 229 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-205ENST00000595028 CSNK1G1Q9HCP0 422 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 GTSE1Q9NYZ3 720 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 NDRG2Q9UN36 371 aaKnown RBP16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ARHGAP26Q9UNA1 814 aa16.01■□□□□ 0.15
TRIM28-205ENST00000595028 ATRXP46100 2492 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 SPECC1L-ADORA2AF8WAN1 911 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 TNFRSF10BO14763 440 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 NCAM2O15394 837 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 OLFM2O95897 454 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 FAM200BP0CF97 657 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 TCF3P15923 654 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 YWHAQP27348 245 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 CTHP32929 405 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 RPS9P46781 194 aaKnown RBP16■□□□□ 0.15
TRIM28-205ENST00000595028 FMO5P49326 533 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 KPNA1P52294 538 aaPredicted RBP16■□□□□ 0.15
TRIM28-205ENST00000595028 STX17P56962 302 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 CLEC17AQ6ZS10 378 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 PDZD8Q8NEN9 1154 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 OVCA2Q8WZ82 227 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 FAM3CQ92520 227 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 CYP2S1Q96SQ9 504 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 HNRNPABQ99729 332 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms