RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 VDRP11473 427 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 CD19P15391 556 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 VIPR2P41587 438 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 GPC5P78333 572 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 PFKPQ01813 784 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 TAF10Q12962 218 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 KRT31Q15323 416 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 ANO6Q4KMQ2 910 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 VITQ6UXI7 678 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 BMP8AQ7Z5Y6 402 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 MFSD6LQ8IWD5 586 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 ANKRD52Q8NB46 1076 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 RBBP8NLQ8NC74 664 aaPredicted RBP12.58□□□□□ -0.4
LIG3-213ENST00000590630 SCAMP5Q8TAC9 235 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 FBXO32Q969P5 355 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 TRMT61BQ9BVS5 477 aaKnown RBP12.58□□□□□ -0.4
LIG3-213ENST00000590630 PLA2G2FQ9BZM2 168 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 KIF9Q9HAQ2 790 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 TDP1Q9NUW8 608 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 HESX1Q9UBX0 185 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 FBXL21Q9UKT6 434 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 ZNF318Q5VUA4 2279 aa12.58□□□□□ -0.4
LIG3-213ENST00000590630 F5P12259 2224 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 SYCE3A1L190 88 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 HEPACAM2A8MVW5 462 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 HHLA1C9JL84 531 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 O00370 1275 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 PRAMEF12O95522 483 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 CKMP06732 381 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 CFHP08603 1231 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 USP17L7P0C7H9 530 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 TUBP50607 506 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 ZNF132P52740 706 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 BCAT1P54687 386 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 FCHO2Q0JRZ9 810 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 IFRD2Q12894 506 aaPredicted RBP12.57□□□□□ -0.4
LIG3-213ENST00000590630 ZNF268Q14587 947 aaPredicted RBP12.57□□□□□ -0.4
LIG3-213ENST00000590630 NCAPHQ15003 741 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 STILQ15468 1287 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 GOLGA7BQ2TAP0 167 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 SNX30Q5VWJ9 437 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 AOPEPQ8N6M6 819 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 CELF5Q8N6W0 485 aaKnown RBP12.57□□□□□ -0.4
LIG3-213ENST00000590630 FUCA2Q9BTY2 467 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 UBXN6Q9BZV1 441 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 BRD9Q9H8M2 597 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 TRPC7Q9HCX4 862 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 TAB2Q9NYJ8 693 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 TSPAN16Q9UKR8 245 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 COL4A2P08572 1712 aa12.57□□□□□ -0.4
LIG3-213ENST00000590630 C2orf78A6NCI8 922 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 RNF225M0QZC1 329 aaPredicted RBP12.56□□□□□ -0.4
LIG3-213ENST00000590630 ZDHHC11BP0C7U3 371 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 KRT5P13647 590 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 ZNF18P17022 549 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 HDCP19113 662 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 RFX1P22670 979 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 ZNF165P49910 485 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 KIF11P52732 1056 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 BST2Q10589 180 aaKnown RBP12.56□□□□□ -0.4
LIG3-213ENST00000590630 GRM2Q14416 872 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 LCLAT1Q6UWP7 414 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 HFE2Q6ZVN8 426 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 GPRIN1Q7Z2K8 1008 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 TTC30AQ86WT1 665 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 YAF2Q8IY57 180 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 BPIFB1Q8TDL5 484 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 SHC3Q92529 594 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 DNASE1L2Q92874 299 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 IRF7Q92985 503 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 USP13Q92995 863 aaPredicted RBP12.56□□□□□ -0.4
LIG3-213ENST00000590630 PBXIP1Q96AQ6 731 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 RSPRY1Q96DX4 576 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 LRFN3Q9BTN0 628 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 VPS16Q9H269 839 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 SIX2Q9NPC8 291 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 TRPV5Q9NQA5 729 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 ARHGEF3Q9NR81 526 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 TLR8Q9NR97 1041 aaKnown RBP12.56□□□□□ -0.4
LIG3-213ENST00000590630 LIMA1Q9UHB6 759 aaKnown RBP12.56□□□□□ -0.4
LIG3-213ENST00000590630 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIG3-213ENST00000590630 SCML2Q9UQR0 700 aa12.56□□□□□ -0.4
LIG3-213ENST00000590630 MIA3Q5JRA6 1907 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 LRRC10BA6NIK2 292 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 SMTNL1A8MU46 457 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 ZNF263O14978 683 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 XPO1O14980 1071 aaKnown RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 CHADO15335 359 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CAVIN2O95810 425 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 OLFM2O95897 454 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 ABL1P00519 1130 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 OAS1P00973 400 aaKnown RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 SETSIPP0DME0 302 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CDK11BP21127 795 aaKnown RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 GDI1P31150 447 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 PLCB2Q00722 1185 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 APBA1Q02410 837 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CNGA2Q16280 664 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 ARHGAP44Q17R89 818 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 ARHGAP29Q52LW3 1261 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms