RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ELF2Q15723 593 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 NFE2Q16621 373 aaPredicted RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 PTPN20Q4JDL3 420 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 BOLA3Q53S33 107 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 PPP1R26Q5T8A7 1209 aaPredicted RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 CC2D1AQ6P1N0 951 aaPredicted RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 C4orf50Q6ZRC1 276 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 VSIG1Q86XK7 387 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 XYLT1Q86Y38 959 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 NPAS4Q8IUM7 802 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 DCP1BQ8IZD4 617 aaKnown RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 SCML4Q8N228 414 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 MYCBPAPQ8TBZ2 947 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 CCHCR1Q8TD31 782 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 GRK7Q8WTQ7 553 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 KBTBD7Q8WVZ9 684 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 ZNF333Q96JL9 665 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 FAM84AQ96KN4 292 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 SUSD3Q96L08 255 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 TWNKQ96RR1 684 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 TBCBQ99426 244 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 DUSP16Q9BY84 665 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 PARD6BQ9BYG5 372 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 RAB17Q9H0T7 212 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 HIPK3Q9H422 1215 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 ST7Q9NRC1 585 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 ABHD14A-ACY1A0A1B0GW23 586 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 TMEM110-MUSTN1A8MSY1 372 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 ZNF487B1APH4 448 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 FSCN2O14926 492 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 SPTLC1O15269 473 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 TADA2AO75478 443 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 POMCP01189 267 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 PDGFRBP09619 1106 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 NPR3P17342 541 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 GPD1P21695 349 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 PSMA2P25787 234 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 SDC4P31431 198 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 PTPN7P35236 360 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 ZNF135P52742 658 aaPredicted RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 AIF1P55008 147 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 DRG2P55039 364 aaKnown RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 SKOR1P84550 965 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 YWHAHQ04917 246 aaPredicted RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 DSC1Q08554 894 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 CUL1Q13616 776 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 SMC1AQ14683 1233 aaKnown RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 FAM102AQ5T9C2 384 aaPredicted RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 OR6B2Q6IFH4 312 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 CNKSR3Q6P9H4 555 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 CEP128Q6ZU80 1094 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 BEND5Q7L4P6 421 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 NECAB2Q7Z6G3 386 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 SLC13A5Q86YT5 568 aaPredicted RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 PSTKQ8IV42 348 aaKnown RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 UBA3Q8TBC4 463 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 C2orf15Q8WU43 125 aaKnown RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 IRGQQ8WZA9 623 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 TSC1Q92574 1164 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 ELMO3Q96BJ8 720 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 SMARCD1Q96GM5 515 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 FUBP3Q96I24 572 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS39-213ENST00000570062 CEP295NLQ96MC4 621 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 MCEEQ96PE7 176 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 CPXM1Q96SM3 734 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 PSMB7Q99436 277 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 SYT15Q9BQS2 421 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 MED10Q9BTT4 135 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 TSPYL1Q9H0U9 437 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 C11orf49Q9H6J7 331 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 LRRC4Q9HBW1 653 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 CNGB3Q9NQW8 809 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 MIOSQ9NXC5 875 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 STIM2Q9P246 746 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 UTP11Q9Y3A2 253 aaKnown RBP8.37□□□□□ -1.07
VPS39-213ENST00000570062 EVPLQ92817 2033 aa8.37□□□□□ -1.07
VPS39-213ENST00000570062 CASTOR2A6NHX0 329 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 OR6C75A6NL08 312 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 H7C4K7 107 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PDE2AO00408 941 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 PPEF2O14830 753 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 WIPF1O43516 503 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PQBP1O60828 265 aaKnown RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 HSF2BPO75031 334 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 OAZ2O95190 189 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 F9P00740 461 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PDGFRAP16234 1089 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 RFC1P35251 1148 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 SSR1P43307 286 aaKnown RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 PTPN9P43378 593 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 TLE2Q04725 743 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PDE4CQ08493 712 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 MTA1Q13330 715 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 NNTQ13423 1086 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 TFDP2Q14188 446 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 MBTPS1Q14703 1052 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PDK2Q15119 407 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 MTFR1Q15390 333 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 CYP1B1Q16678 543 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 TIGD5Q53EQ6 642 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms