RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 AIFM2Q9BRQ8 373 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 PABPC3Q9H361 631 aaKnown RBP11.28□□□□□ -0.6
CLK3-226ENST00000569406 NKIRAS1Q9NYS0 192 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 YDJCA8MPS7 323 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 SPAG7O75391 227 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 BAIAP3O94812 1187 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ATP5DP30049 168 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 CENPAP49450 140 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 COX10Q12887 443 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 GRM2Q14416 872 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 RGS21Q2M5E4 152 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 GRAMD1BQ3KR37 738 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ZNF410Q86VK4 478 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 RAD54LQ92698 747 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ZC3H12CQ9C0D7 883 aaKnown RBP11.28□□□□□ -0.6
CLK3-226ENST00000569406 RBM38Q9H0Z9 239 aaKnown RBP11.28□□□□□ -0.6
CLK3-226ENST00000569406 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLK3-226ENST00000569406 AIPL1Q9NZN9 384 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 FAM25EA8MYX2 175 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L15C9J2P7 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L13C9JLJ4 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L11C9JVI0 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L18D6R9N7 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L22D6RA61 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L17D6RBQ6 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L19D6RCP7 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L20D6RJB6 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ENPP3O14638 875 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ZC3H11AO75152 810 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLK3-226ENST00000569406 FGFR4P22455 802 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 HADHAP40939 763 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ECE1P42892 770 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 B2MP61769 119 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 PRKCEQ02156 737 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L24Q0WX57 530 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 CETN1Q12798 172 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ITGADQ13349 1161 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 TMCO4Q5TGY1 634 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 DPY19L2P1Q6NXN4 242 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 PPP1R18Q6NYC8 613 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 USP17L6PQ6QN14 398 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 EMSYQ7Z589 1322 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 CCDC25Q86WR0 208 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 NLRP7Q8WX94 980 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 PMM1Q92871 262 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 MASTLQ96GX5 879 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 CCDC77Q9BR77 488 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ANLNQ9NQW6 1124 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 PPM1HQ9ULR3 514 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ATRNL1Q5VV63 1379 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 A0A1W2PRG0 241 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 KRBA1A5PL33 1030 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 ZW10O43264 779 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 BRAFP15056 766 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 CPA2P48052 419 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 NUP107P57740 925 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 MKRN3Q13064 507 aaKnown RBP11.27□□□□□ -0.6
CLK3-226ENST00000569406 ACVR2BQ13705 512 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 LONRF1Q17RB8 773 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 HEATR4Q86WZ0 1026 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 LRRC6Q86X45 466 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 LSMEM2Q8N112 164 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 NLGN1Q8N2Q7 840 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 CLIP4Q8N3C7 705 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 EIF1ADQ8N9N8 165 aaKnown RBP11.27□□□□□ -0.6
CLK3-226ENST00000569406 GRAMD1AQ96CP6 724 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 CNOT6LQ96LI5 555 aaKnown RBP11.27□□□□□ -0.6
CLK3-226ENST00000569406 GCNAQ96QF7 691 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 ERGIC2Q96RQ1 377 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 NR2E3Q9Y5X4 410 aa11.27□□□□□ -0.6
CLK3-226ENST00000569406 CYP3A7-CYP3A51PA0A087WV96 503 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 CIB2O75838 187 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 EYA4O95677 639 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 PRLP01236 227 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 RRM1P23921 792 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 CYP3A7P24462 503 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 PMLP29590 882 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 RAPGEF1Q13905 1077 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 TRIM71Q2Q1W2 868 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 QRICH1Q2TAL8 776 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ANKRD20A4Q4UJ75 823 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 SGO2Q562F6 1265 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ARSHQ5FYA8 562 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 UBAP2Q5T6F2 1119 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 NANOGP8Q6NSW7 305 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 POU5F2Q8N7G0 328 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 FLCNQ8NFG4 579 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ETNPPLQ8TBG4 499 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 JDP2Q8WYK2 163 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 WNK4Q96J92 1243 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ZFRQ96KR1 1074 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 C1orf74Q96LT6 269 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 FBXL18Q96ME1 805 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 HERC2P3Q9BVR0 1158 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 SEMA4AQ9H3S1 761 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 BCAS3Q9H6U6 928 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 SLCO1B3Q9NPD5 702 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 EMILIN3Q9NT22 766 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 NCKIPSDQ9NZQ3 722 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 TXNDC16Q9P2K2 825 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms