RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PDE1BQ01064 536 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 KRT27Q7Z3Y8 459 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 TTLL6Q8N841 843 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 DEPDC1BQ8WUY9 529 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 CGRRF1Q99675 332 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 TUBB6Q9BUF5 446 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 ST6GALNAC4Q9H4F1 302 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 LRCH1Q9Y2L9 728 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 PDE5AO76074 875 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 ZNF568Q3ZCX4 644 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 AKT1S1Q96B36 256 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 ALKBH8Q96BT7 664 aaKnown RBP15.11■□□□□ 0.01
VPS35-210ENST00000568784 IFT122Q9HBG6 1241 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 SAR1AQ9NR31 198 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 NUMBLQ9Y6R0 609 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 NHSQ6T4R5 1651 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 PDGFRAP16234 1089 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 GNAZP19086 355 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 MIPP30301 263 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 PTGER2P43116 358 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 BCAR1P56945 870 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 UBAP2LQ14157 1087 aaKnown RBP15.1■□□□□ 0.01
VPS35-210ENST00000568784 DPYSL3Q14195 570 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 C15orf59Q2T9L4 293 aaPredicted RBP15.1■□□□□ 0.01
VPS35-210ENST00000568784 PTPN20Q4JDL3 420 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 ZNF667Q5HYK9 610 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 SCUBE1Q8IWY4 988 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 PYDC1Q8WXC3 89 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 TTLL13PA6NNM8 815 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 UGT1A9O60656 530 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 KDELR1P24390 212 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 ZNF252P-AS1Q0IIN9 211 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 ATG16L1Q676U5 607 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 VCPIP1Q96JH7 1222 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 UGT1A7Q9HAW7 530 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 UGT1A10Q9HAW8 530 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 UGT1A8Q9HAW9 530 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 TM9SF1O15321 606 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 LRCH4O75427 683 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 LYPLA2O95372 231 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 ETS2P15036 469 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 SH3PXD2AQ5TCZ1 1133 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 RASSF3Q86WH2 238 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 APOPT1Q96IL0 206 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 FBXL18Q96ME1 805 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 MIS12Q9H081 205 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 PICK1Q9NRD5 415 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 LRRC42Q9Y546 428 aa15.1■□□□□ 0.01
VPS35-210ENST00000568784 ITGAVP06756 1048 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 NEK3P51956 506 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 SESN2P58004 480 aaPredicted RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 RPL10AP62906 217 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 SLC25A3Q00325 362 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 OASLQ15646 514 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 POLNQ7Z5Q5 900 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 NIM1KQ8IY84 436 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 C7orf31Q8N865 590 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 RBM15BQ8NDT2 890 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 FBXO27Q8NI29 283 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 ANKRD36BP1Q96IX9 119 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 VPS11Q9H270 941 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 SLC38A10Q9HBR0 1119 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 ZNRF3Q9ULT6 936 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 ADAMTSL1Q8N6G6 1762 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 GJB1P08034 283 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 SNRPAP09012 282 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 CRADDP78560 199 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 SGSM1Q2NKQ1 1148 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 TRIM50Q86XT4 487 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 C17orf75Q9HAS0 396 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 DRG1Q9Y295 367 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 NR2E3Q9Y5X4 410 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 E5RJQ4 531 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 NOP56O00567 594 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 MAP3K13O43283 966 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 ZMPSTE24O75844 475 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 PTP4A2Q12974 167 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 CIAPIN1Q6FI81 312 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 BANPQ8N9N5 519 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 PRPF31Q8WWY3 499 aaKnown RBP15.09■□□□□ 0.01
VPS35-210ENST00000568784 ZNF333Q96JL9 665 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 WWP1Q9H0M0 922 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 USP18Q9UMW8 372 aa15.09■□□□□ 0.01
VPS35-210ENST00000568784 STK10O94804 968 aaKnown RBP15.08■□□□□ 0.01
VPS35-210ENST00000568784 AP2B1P63010 937 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 STX3Q13277 289 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 RABGAP1LQ5R372 815 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 ADGRD1Q6QNK2 874 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 RIPOR1Q6ZS17 1223 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 CDHR3Q6ZTQ4 885 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 SDCCAG8Q86SQ7 713 aaPredicted RBP15.08■□□□□ 0.01
VPS35-210ENST00000568784 VSIG10LQ86VR7 867 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 TDRPQ86YL5 185 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 ZBTB8OSQ8IWT0 167 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 CEP41Q9BYV8 373 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 ARHGAP28Q9P2N2 729 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 STRIP2Q9ULQ0 834 aa15.08■□□□□ 0.01
VPS35-210ENST00000568784 A0A0B4J269 797 aa15.08■□□□□ 0
VPS35-210ENST00000568784 NDC80O14777 642 aa15.08■□□□□ 0
VPS35-210ENST00000568784 MAGEB2O15479 319 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms