RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PDE8BO95263 885 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 KITP10721 976 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 ADORA2AP29274 412 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 SLC7A1P30825 629 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 ARHGAP25P42331 645 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 POLGP54098 1239 aaPredicted RBP3.56□□□□□ -1.84
VPS35-207ENST00000568191 E2F1Q01094 437 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 GHRHRQ02643 423 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 CTBP1Q13363 440 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 KLF9Q13886 244 aaPredicted RBP3.56□□□□□ -1.84
VPS35-207ENST00000568191 ZNF268Q14587 947 aaPredicted RBP3.56□□□□□ -1.84
VPS35-207ENST00000568191 FAM187BQ17R55 369 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 SUPT20HL1Q3ZLR7 823 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 FCRL6Q6DN72 434 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 ANO7Q6IWH7 933 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 CXorf57Q6NSI4 855 aaKnown RBP3.56□□□□□ -1.84
VPS35-207ENST00000568191 PPP4R4Q6NUP7 873 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 SLC2A7Q6PXP3 512 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 ZNF813Q6ZN06 617 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 ZNF280BQ86YH2 543 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 PIGOQ8TEQ8 1089 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 IPCEF1Q8WWN9 437 aaPredicted RBP3.56□□□□□ -1.84
VPS35-207ENST00000568191 THAP7Q9BT49 309 aaPredicted RBP3.56□□□□□ -1.84
VPS35-207ENST00000568191 RHOBTB2Q9BYZ6 727 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 VPS16Q9H269 839 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 FAM204AQ9H8W3 233 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 LOC102723971A0A1B0GUV8 181 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 ADAMTS3O15072 1205 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 AKAP10O43572 662 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 RASSF9O75901 435 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 INMTO95050 263 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 RASAL1O95294 804 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 FGAP02671 866 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 A1BGP04217 495 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 CSF1RP07333 972 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 TMEM191BP0C7N4 346 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 NHLRC4P0CG21 123 aaPredicted RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 CYP2A6P11509 494 aaPredicted RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 CD19P15391 556 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 NPR1P16066 1061 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 EN2P19622 333 aaPredicted RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 GKP32189 559 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 RAB27AP51159 221 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 RENBPP51606 427 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 ALDH5A1P51649 535 aaPredicted RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 ARFIP2P53365 341 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 BCAT1P54687 386 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 MCL1Q07820 350 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 MINDY4Q4G0A6 757 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 CACHD1Q5VU97 1274 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 TMEM65Q6PI78 240 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 VSTM1Q6UX27 236 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 SKAP1Q86WV1 359 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 CELF5Q8N6W0 485 aaKnown RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 NANOGP1Q8N7R0 232 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 SPSB4Q96A44 273 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 RITA1Q96K30 269 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 HS6ST2Q96MM7 605 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 LENG8Q96PV6 779 aaPredicted RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 ACO2Q99798 780 aaKnown RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 MACROD1Q9BQ69 325 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 GBA2Q9HCG7 927 aaPredicted RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 TRIM36Q9NQ86 728 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 XPNPEP3Q9NQH7 507 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 ELOVL5Q9NYP7 299 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 GABBR1Q9UBS5 961 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 TPCN1Q9ULQ1 816 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 DRG1Q9Y295 367 aaKnown RBP3.55□□□□□ -1.84
VPS35-207ENST00000568191 SNX14Q9Y5W7 946 aa3.55□□□□□ -1.84
VPS35-207ENST00000568191 CFAP69A5D8W1 941 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 MBD3L4A6NDZ8 208 aaPredicted RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 MBD3L3A6NE82 208 aaPredicted RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 ISM1B1AKI9 464 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 FAM227AF5H4B4 570 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 TP73O15350 636 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 CCP110O43303 1012 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 TMPRSS11DO60235 418 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 PMPCBO75439 489 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 MT-CO3P00414 261 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 FGBP02675 491 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 CREB1P16220 341 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 AGFG1P52594 562 aaKnown RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 CACNB3P54284 484 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 DAZAP2Q15038 168 aaPredicted RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 RABEP1Q15276 862 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 LY6KQ17RY6 165 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 PTCHD4Q6ZW05 846 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 MAEAQ7L5Y9 396 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 BHLHA9Q7RTU4 235 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 KRT73Q86Y46 540 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 TPH2Q8IWU9 490 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 ZBTB34Q8NCN2 500 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 TMEM171Q8WVE6 324 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 ZBTB9Q96C00 473 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 VPS50Q96JG6 964 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 ZNF668Q96K58 619 aaPredicted RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 TAAR9Q96RI9 348 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 PRR25Q96S07 402 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 MMS19Q96T76 1030 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 DPH1Q9BZG8 443 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms